View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_low_14 (Length: 347)
Name: NF3328_low_14
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 48172175 - 48172519
Alignment:
| Q |
1 |
cttatactggcctaatgtccttaactacatttagcaggcgttgacctaagtaaagcaaatactgttgtcaagatgattgaatgggaaaagttgggcttgt |
100 |
Q |
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| T |
48172175 |
cttattctgtcctaatgttcttaactacattttgcaggcgttgcccaaagtaaagcaaatactattgtcaagatgattgaatgggaaaagttgggcttgt |
48172274 |
T |
|
| Q |
101 |
agtctgctactttattaaactgccaaattgtgtactcagagagcgtgcagtgtaacgttgattgtttttgcttnnnnnnncacattgattcttgagctag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | |
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| T |
48172275 |
agtctgctactttattaaactgccaaattgtgtactcagagagcgtgcagtgtaacgttgattgtttttactaaaaaaaacacattgattcttgagctgg |
48172374 |
T |
|
| Q |
201 |
tggctagttttatgcataacaaagcatcattttttacgaccattcaacaaaccccagacaccgtgacagttttctgagtttgagctgattttgttcctct |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48172375 |
tggctagttttatgcataacaacacatcattttttacgaccattcaacaaaccccagacaccgtgacagttttctgagtttgagctgattttgttcctct |
48172474 |
T |
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| Q |
301 |
tgggaactgtttatctctaatgtatcttgtgtctgtgctcctcct |
345 |
Q |
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|||||||||||||||||||||||||||||||| ||| || ||||| |
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| T |
48172475 |
tgggaactgtttatctctaatgtatcttgtgtttgttctgctcct |
48172519 |
T |
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