View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_low_18 (Length: 308)
Name: NF3328_low_18
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 292
Target Start/End: Original strand, 33994621 - 33994904
Alignment:
| Q |
9 |
acatcatcactattatttactattgcttattgtttcaatttattttgttacatttcttaaacttttagtccttaagattataggtggcaagtgaacctta |
108 |
Q |
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| T |
33994621 |
acatcatcactattatttactattgcttattgtttcaatttattttgttacatttcttaaacttttagtccttaagattataggtggcaagtgaacctta |
33994720 |
T |
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| Q |
109 |
tctaatattctctgctgttaattatgttatcatgatcattgatttgagatccgacggtccaaatattccgtctcgctgttacatcagagaatccaaattc |
208 |
Q |
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| T |
33994721 |
tctaatattctctgctgttaattatgttatcatgatcattgatttgagatccgacggtccaaatattccgtctcgctgttacagcagagaatccaaattc |
33994820 |
T |
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| Q |
209 |
atctaaaaatgttgttgtgaataggtgtttctgttggagctgggtggcaaagtgttgtagcatatgtaaacataggctgctatt |
292 |
Q |
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| T |
33994821 |
atctaaaaatgttgttgtgaataggtgtttctgttggagctgggtggcaaagtgttgtagcatatgtaaacataggctgctatt |
33994904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 33986409 - 33986472
Alignment:
| Q |
229 |
ataggtgtttctgttggagctgggtggcaaagtgttgtagcatatgtaaacataggctgctatt |
292 |
Q |
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| T |
33986409 |
ataggagttgctgttggagctggctggcaaagcgttgcagcatatgtaaacataggctcctatt |
33986472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 9234562 - 9234506
Alignment:
| Q |
228 |
aataggtgtttctgttggagctgggtggcaaagtgttgtagcatatgtaaacatagg |
284 |
Q |
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| T |
9234562 |
aataggagtttctgttggagctgggtggcaaaggattgtagcatatgtaaacatagg |
9234506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 9214796 - 9214740
Alignment:
| Q |
228 |
aataggtgtttctgttggagctgggtggcaaagtgttgtagcatatgtaaacatagg |
284 |
Q |
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|||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
9214796 |
aataggagtttctgttggagctggatggcaaagcattgtagcatatgtaaacatagg |
9214740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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