View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_low_20 (Length: 276)
Name: NF3328_low_20
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 2017312 - 2017059
Alignment:
| Q |
18 |
accaatcattttggggtatcagaatgacacatcttcccgtctcatcaacacgaaacaagttttttgccgttggctgtgacacgattgcaatactcgcagc |
117 |
Q |
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| T |
2017312 |
accaatcattttggggtatcagaatgacacattttcccgtctcatcaacacgaaacaagtttgttgccgttggctgtgacacgattgcaatactcgcagc |
2017213 |
T |
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| Q |
118 |
atttgattttgggggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgt |
217 |
Q |
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| T |
2017212 |
atttgattttgggggaaacaactacaccacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgt |
2017113 |
T |
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| Q |
218 |
tgtcagatttcaataccgcaaggtcatttgttcgagaaagtgtcctttgctact |
271 |
Q |
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| T |
2017112 |
tgtcagatttcaataccgcaaggtcatttgttcgagaaagtgtcctttgttact |
2017059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 242
Target Start/End: Original strand, 40566430 - 40566586
Alignment:
| Q |
86 |
gttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatatcg |
185 |
Q |
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| T |
40566430 |
gttggctgtgacacgattggagcactctcggcgattgattctgggggaaacaactacaccacaggatgtgtggctttatgcaacaggcttgatgatatta |
40566529 |
T |
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| Q |
186 |
tggccaatgaatcttgctccggcactggttgttgtcagatttcaataccgcaaggtc |
242 |
Q |
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| T |
40566530 |
tggccagtcaatcttgctcaggtactggttgttgcgagatttcaataccccaaggtc |
40566586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 40595769 - 40595958
Alignment:
| Q |
45 |
cacatcttcccgtctcatcaacacgaaacaagttttttgccgttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacac |
144 |
Q |
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| T |
40595769 |
cacattttcacgtctcgccaactcaaaacaagttgatagcagttggatgtgacacaatgggactactcgaagcaattgattctaaaggaaacacatacac |
40595868 |
T |
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| Q |
145 |
gacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtcagatttcaatacc |
234 |
Q |
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| T |
40595869 |
cactgcatgtgtggccttgtgcaacaggcttagtgatattgtggccaatgaatcttgttccggcccaggttgttgtgagatttcaatacc |
40595958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 242
Target Start/End: Original strand, 40589388 - 40589562
Alignment:
| Q |
68 |
cgaaacaagttttttgccgttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacacgacgggatgtttggctttgtgca |
167 |
Q |
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| T |
40589388 |
cgaaacaagttggtagcagttggctgtgatacatctggaatactcggagtaattgattctgaaggaaacaactacacctctggatgtttggcttggtgca |
40589487 |
T |
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| Q |
168 |
acaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtcagatttcaataccgcaaggtc |
242 |
Q |
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| T |
40589488 |
acaggcacgctgatctcgttgccaatgagtcttgttctggtcctggttgttgccagatttcggtaccccaaggtc |
40589562 |
T |
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