View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_low_24 (Length: 247)
Name: NF3328_low_24
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 34 - 240
Target Start/End: Original strand, 8038986 - 8039193
Alignment:
| Q |
34 |
ttgttaataaatatgctgactttcgggnnnnnnnntatgtatcatctattggaaattctttagcactgacattattgattgaatgcgggtgtagtatcca |
133 |
Q |
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| T |
8038986 |
ttgtttataaatatgctgactttcgggaaaaaaaatatgtatcatctattgcaaattctttagcactgacattattgattgaatgcgggtgtagtatcca |
8039085 |
T |
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| Q |
134 |
acatgtgtcgatgtctaatatcaatacgccactgacacatttgattaaattcaatgaattannnnnnnaaattaatatcaaagtcgatgattcagtgt-g |
232 |
Q |
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| T |
8039086 |
acatgtgtcgatgtctaatatcaatacgccactgacacatttgattaaattcaatgaattattttcttaaattaatatcaaagtcgatgattcagtgtcg |
8039185 |
T |
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| Q |
233 |
tgtctgtg |
240 |
Q |
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|||||||| |
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| T |
8039186 |
tgtctgtg |
8039193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 8414174 - 8414083
Alignment:
| Q |
94 |
tagcactgacattattgattgaatgcgggtgtagtatccaacatgtgtcgatgtctaatatcaatacgccactgacacatttgattaaattc |
185 |
Q |
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| T |
8414174 |
tagcactgacatttctgattgaatgccaatttagtatccaacatgtgtcgatgtctaataacaacatgccactgacacatgtgattaaattc |
8414083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 8033780 - 8033881
Alignment:
| Q |
134 |
acatgtgtcgatgtctaatatcaatacgccactgacacatttgattaaattcaatgaattannnnnnnaaattaatatc--aaagtcgatgattcagtgt |
231 |
Q |
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| T |
8033780 |
acatgtctcaatgcctaataccaacacaccactgacacatttgattaaattcaatgaattattttctaaaattaatatcaaaaagtcgaagattcagtgt |
8033879 |
T |
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| Q |
232 |
gt |
233 |
Q |
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|| |
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| T |
8033880 |
gt |
8033881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 8414318 - 8414270
Alignment:
| Q |
94 |
tagcactgacattattgattgaatgcgggtgtagtatccaacatgtgtc |
142 |
Q |
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| T |
8414318 |
tagcactgacatttctgattgaatgccagtttagtatccaacatgtgtc |
8414270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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