View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_low_26 (Length: 243)
Name: NF3328_low_26
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 36743653 - 36743421
Alignment:
| Q |
11 |
atcatcaccaggtatgtcttcaagagttaaactgacaaggtagaactcaccttgtgtataatttttaatgtaaaatgcacctggtattccaaaatcatta |
110 |
Q |
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| T |
36743653 |
atcatgaccaggtatgtcttcaagagttaaactgacaaggtagaactcaccttgtgtataatttttaatgtaaaatgcacctggtattccaaaatcatta |
36743554 |
T |
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| Q |
111 |
tcccattcaaaataaacactgaatgcatcttgtcttgctgccaaggttggtaaaaaaggaatacgtttctccagaaagaactgatctccaacaaacccat |
210 |
Q |
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| T |
36743553 |
tcccattcaaaataaacactgaatgcatcttgtcttgctgccaaggttggtaaaaaaggaatacgtttctccagaaagaactgatctccaacaaacccat |
36743454 |
T |
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| Q |
211 |
ttcccattcctaaaataataattaaaaagatta |
243 |
Q |
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| T |
36743453 |
ttcccattcctaaaataataattaaaaagatta |
36743421 |
T |
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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 6458686 - 6458822
Alignment:
| Q |
27 |
tcttcaagagttaaactgacaaggtagaactcaccttgtgtataatttttaatgtaaaatgcacctggtattccaaaatcattatcccattcaaaataaa |
126 |
Q |
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| T |
6458686 |
tcttcaagagtcacactaacaaggaagaattcagcttgtgtataatttcttatgtaaaatgctccaggtattccaaaattagcatcatattcaaagaaaa |
6458785 |
T |
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| Q |
127 |
cactgaatgcatcttgtcttgctgccaaggttggtaa |
163 |
Q |
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| T |
6458786 |
cactgaatgcatcttgtcttgctcccaaagttggtaa |
6458822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 6452526 - 6452644
Alignment:
| Q |
45 |
acaaggtagaactcaccttgtgtataatttttaatgtaaaatgcacctggtattccaaaatcattatcccattcaaaataaacactgaatgcatcttgtc |
144 |
Q |
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| T |
6452526 |
acaaggaagaactcagcttgtgtataatttcttatgtaaaatgctcctgggattccaaagttagcatcatattcaaagaaaatactgaatgcatcttgtc |
6452625 |
T |
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| Q |
145 |
ttgctgccaaggttggtaa |
163 |
Q |
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| T |
6452626 |
ttgctcccaaagttggtaa |
6452644 |
T |
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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 9602815 - 9602731
Alignment:
| Q |
78 |
atgtaaaatgcacctggtattccaaaatcattatcccattcaaaataaacactgaatgcatcttgtcttgctgccaaggttggta |
162 |
Q |
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| T |
9602815 |
atgtaaaatgctcctgggattccaaaatcagcatcccaatcaaagtgaatactaaatgcatcttgtcttgctcccaaggttggta |
9602731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 32024078 - 32024163
Alignment:
| Q |
78 |
atgtaaaatgcacctggtattccaaaa----tcattatcccattcaaaataaacactgaatgcatcttgtcttgctgccaaggttg |
159 |
Q |
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| T |
32024078 |
atgtaaaatgctcctgggattccaaaatcattcattatcccaatcaaagtgaatactaaatgcttcttgtcttgctcccaaagttg |
32024163 |
T |
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