View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_low_27 (Length: 239)
Name: NF3328_low_27
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_27 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 4803428 - 4803645
Alignment:
| Q |
23 |
aattcatgccagagggtattaatcaaataaaaaagtgtgaagcaacataactacaagatatgaaataacatata---taccttaattccaacgttgtatt |
119 |
Q |
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| T |
4803428 |
aattcacgacagagagtattaatcaaataaaaaagtgtgaagcaacataactacaagatatgaaataacatatagtataccttaattccaacgttgtatt |
4803527 |
T |
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| Q |
120 |
gtctgccttttgcttgagatccttaggaattggaccagaaagcttgtttcccgtaagattgctacaatgacaatgaattatatagcttaagttattgatt |
219 |
Q |
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| T |
4803528 |
gtctgccttttccttgagatccttaggaattggaccagaaagcttgtttcccgttagattgctacaatcacaatgaat--tatagcttaagtgatcgatt |
4803625 |
T |
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| Q |
220 |
aaatagaatgcaaaacaatt |
239 |
Q |
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||| |||||||||||||||| |
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| T |
4803626 |
aaagagaatgcaaaacaatt |
4803645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 4848498 - 4848709
Alignment:
| Q |
22 |
taattcatgccagagggtattaatcaaataaaaaagtgtgaagcaacataactacaagatatgaaataacatatataccttaattccaacgttgtattgt |
121 |
Q |
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| T |
4848498 |
taattcatgacagagggtattaatcaaataaaaaagtgcgaagcaacataactacaatatatgaaataacata----ccttaattccaacgttttattgt |
4848593 |
T |
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| Q |
122 |
ctgccttttgcttgagatccttaggaattggaccagaaagcttgtttcccgtaagattgctacaatgacaatgaattatatagcttaagttattgattaa |
221 |
Q |
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| T |
4848594 |
ctgccttttgcttgagatccttaggaattggactagaaagcttgtttcccgttagattgctacaatgacgatgaat--tatagcttaagtgattgattaa |
4848691 |
T |
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| Q |
222 |
atagaatgcaaaacaatt |
239 |
Q |
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| T |
4848692 |
agagaatgcaaaacaatt |
4848709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 4828650 - 4828722
Alignment:
| Q |
131 |
gcttgagatccttaggaattggaccagaaagcttgtttcccgtaagattgctacaatgacaatgaattatata |
203 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
4828650 |
gcttgagatccttaggaattggaccagaaagcctgtttcccgttagattgctacaatgacaatgaattatata |
4828722 |
T |
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