View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_low_31 (Length: 228)
Name: NF3328_low_31
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 15314193 - 15313989
Alignment:
| Q |
18 |
agcttaaaagtgctagtcagtctcttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctctgacttgcctatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15314193 |
agcttaaaagtgctagtcagtctcttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctctgacttgcctatttg |
15314094 |
T |
|
| Q |
118 |
gttgttcaatataagtggccttgcttatttaaatcttcaagcaaatcgtttccatggacaaatacctgaaacattattgaaacttcaaaacttgattaca |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15314093 |
gttgttcaatataagtggccttgcttatttaaatcttcaagcaaatcgtttccatggacaaatacctgaaacattattgaaacttcaaaacttgattaca |
15313994 |
T |
|
| Q |
218 |
ttgat |
222 |
Q |
| |
|
||||| |
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|
| T |
15313993 |
ttgat |
15313989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 15494562 - 15494358
Alignment:
| Q |
18 |
agcttaaaagtgctagtcagtctcttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctctgacttgcctatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15494562 |
agcttaaaagtgctagtcagtctcttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctctgacttgcctatttg |
15494463 |
T |
|
| Q |
118 |
gttgttcaatataagtggccttgcttatttaaatcttcaagcaaatcgtttccatggacaaatacctgaaacattattgaaacttcaaaacttgattaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15494462 |
gttgttcaatataagtggccttgcttatttaaatcttcaagcaaatcgtttccatggacaaatacctgaaacattattgaaacttcaaaacttgattaca |
15494363 |
T |
|
| Q |
218 |
ttgat |
222 |
Q |
| |
|
||||| |
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|
| T |
15494362 |
ttgat |
15494358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 15303309 - 15303163
Alignment:
| Q |
37 |
gtctcttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctctgacttgcctatttggttgttcaatataagtggc |
136 |
Q |
| |
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|||||||| ||||||||| |||||||| ||||||||||||||||||||| ||| |||||||| ||||| |||||||| |||||||||||| |||||||| |
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| T |
15303309 |
gtctcttccatatgccaatttcacttcacttgaatatcttgatctttctggaaacgatttcttttctgaattgcctatatggttgttcaatttaagtggc |
15303210 |
T |
|
| Q |
137 |
cttgcttatttaaatcttcaagcaaatcgtttccatggacaaatacc |
183 |
Q |
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||| |||||||||||||| | | |||| ||||| |||| |||||||| |
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| T |
15303209 |
ctttcttatttaaatcttaaggaaaatagtttctatggccaaatacc |
15303163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 15483678 - 15483532
Alignment:
| Q |
37 |
gtctcttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctctgacttgcctatttggttgttcaatataagtggc |
136 |
Q |
| |
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|||||||| ||||||||| |||||||| ||||||||||||||||||||| ||| |||||||| ||||| |||||||| |||||||||||| |||||||| |
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|
| T |
15483678 |
gtctcttccatatgccaatttcacttcacttgaatatcttgatctttctggaaacgatttcttttctgaattgcctatatggttgttcaatttaagtggc |
15483579 |
T |
|
| Q |
137 |
cttgcttatttaaatcttcaagcaaatcgtttccatggacaaatacc |
183 |
Q |
| |
|
||| |||||||||||||| | | |||| ||||| |||| |||||||| |
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|
| T |
15483578 |
ctttcttatttaaatcttaaggaaaatagtttctatggccaaatacc |
15483532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 15284794 - 15284648
Alignment:
| Q |
37 |
gtctcttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctctgacttgcctatttggttgttcaatataagtggc |
136 |
Q |
| |
|
|||||||| ||||||||| |||||||| ||||||||||||||||||||| |||||||||| || | ||| |||||||| |||||||||||| ||||||| |
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| T |
15284794 |
gtctcttccatatgccaatttcacttcacttgaatatcttgatctttctgaaaatgatttattttatgaattgcctatatggttgttcaatctaagtggt |
15284695 |
T |
|
| Q |
137 |
cttgcttatttaaatcttcaagcaaatcgtttccatggacaaatacc |
183 |
Q |
| |
|
||| |||||||||||||| | |||| |||||||||| |||||||| |
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|
| T |
15284694 |
ctttcttatttaaatcttgggggaaatagtttccatggccaaatacc |
15284648 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 15465163 - 15465017
Alignment:
| Q |
37 |
gtctcttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctctgacttgcctatttggttgttcaatataagtggc |
136 |
Q |
| |
|
|||||||| ||||||||| |||||||| ||||||||||||||||||||| |||||||||| || | ||| |||||||| |||||||||||| ||||||| |
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| T |
15465163 |
gtctcttccatatgccaatttcacttcacttgaatatcttgatctttctgaaaatgatttattttatgaattgcctatatggttgttcaatctaagtggt |
15465064 |
T |
|
| Q |
137 |
cttgcttatttaaatcttcaagcaaatcgtttccatggacaaatacc |
183 |
Q |
| |
|
||| |||||||||||||| | |||| |||||||||| |||||||| |
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|
| T |
15465063 |
ctttcttatttaaatcttgggggaaatagtttccatggccaaatacc |
15465017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 15447057 - 15446908
Alignment:
| Q |
37 |
gtctcttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctctgacttgcctatttggttgttcaatataagtggc |
136 |
Q |
| |
|
||||||| ||||| ||| ||||| || ||||||||||||||||||||| | ||| ||||||||||||| |||||| |||||||||||||| |||||||| |
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|
| T |
15447057 |
gtctctttcatatgtcaatttcacctcacttgaatatcttgatctttcttacaataatttcttctctgaattgcctctttggttgttcaatctaagtggc |
15446958 |
T |
|
| Q |
137 |
cttgcttatttaaatcttcaagcaaatcgtttccatggacaaatacctga |
186 |
Q |
| |
|
||| ||||||| ||||||| || ||||| || ||||| ||||||||||| |
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| T |
15446957 |
ctttcttatttgaatcttcgagaaaatcagtttcatggccaaatacctga |
15446908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 18052799 - 18052626
Alignment:
| Q |
38 |
tctcttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctctgacttgcctatttggttgttcaatataagtggcc |
137 |
Q |
| |
|
||||||| ||||||||| || || || ||||||||||||||||||||| | ||||||||||| ||||| | |||| |||||| |||||| ||||||||| |
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|
| T |
18052799 |
tctcttcaatatgccaattttacatcacttgaatatcttgatctttctgacaatgatttcttttctgaactacctaattggttattcaatctaagtggcc |
18052700 |
T |
|
| Q |
138 |
ttgcttatttaaatcttcaagcaaatcgtttccatggacaaatacctgaaacattattgaaacttcaaaacttg |
211 |
Q |
| |
|
|| | |||| |||||| || ||||||||| ||||| |||||| ||||| |||||||| |||| ||||||| |
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|
| T |
18052699 |
tttatcatttgaatcttggagaaaatcgttttcatggcttaatacccgaaactttattgaatcttcgaaacttg |
18052626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 15298544 - 15298438
Alignment:
| Q |
41 |
cttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctctgacttgcctatttggttgttcaatataagtggccttg |
140 |
Q |
| |
|
|||| ||||||||| || | ||| |||||| |||||||| ||||| |||||||||||| ||||| | |||||| ||||||||||| |||||| ||| |
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|
| T |
15298544 |
cttccatatgccaattttatttcgcttgaagatcttgatgtttctggaaatgatttcttttctgaactccctattcggttgttcaatcaaagtggtcttt |
15298445 |
T |
|
| Q |
141 |
cttattt |
147 |
Q |
| |
|
||||||| |
|
|
| T |
15298444 |
cttattt |
15298438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 15478913 - 15478807
Alignment:
| Q |
41 |
cttctatatgccaacttcacttcccttgaatatcttgatctttctcaaaatgatttcttctctgacttgcctatttggttgttcaatataagtggccttg |
140 |
Q |
| |
|
|||| ||||||||| || | ||| |||||| |||||||| ||||| |||||||||||| ||||| | |||||| ||||||||||| |||||| ||| |
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|
| T |
15478913 |
cttccatatgccaattttatttcgcttgaagatcttgatgtttctggaaatgatttcttttctgaactccctattcggttgttcaatcaaagtggtcttt |
15478814 |
T |
|
| Q |
141 |
cttattt |
147 |
Q |
| |
|
||||||| |
|
|
| T |
15478813 |
cttattt |
15478807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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