View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_low_32 (Length: 211)
Name: NF3328_low_32
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 37027483 - 37027432
Alignment:
| Q |
96 |
tgaaacattgttacttcattcagaaaagaagaaggaaataaataaatttaaa |
147 |
Q |
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| T |
37027483 |
tgaaacattgttacttcattcagaaaagaagaaggaaataaataaatttaaa |
37027432 |
T |
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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 37027531 - 37027481
Alignment:
| Q |
19 |
aagtagctcagataccagagtaagttaattagtgatgttacaatatggtga |
69 |
Q |
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| T |
37027531 |
aagtagctcagataccagagtaagttaatcagtgatgttacaatatggtga |
37027481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 37025974 - 37025926
Alignment:
| Q |
145 |
aaaggtaaacgggaatagaaatataaagcatcagatacaccatgcaagg |
193 |
Q |
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| T |
37025974 |
aaaggtaaaggggaatagaaatataaagcatcagatacaccatgcaagg |
37025926 |
T |
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