View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_low_33 (Length: 209)
Name: NF3328_low_33
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 34658416 - 34658242
Alignment:
| Q |
18 |
gttggaatcacgtgcatacaaagaatgggaattggatttataatcaacattatagccacattaatctcagcaccagttgaaatcaaaagaaaagaagttg |
117 |
Q |
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| T |
34658416 |
gttggaatcacgtgcatacaaagaatgggaattggatttataatcaacattatagccacattaatctcagcaccagttgaaatcaaaagaaaagaagttg |
34658317 |
T |
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| Q |
118 |
ctgctaagtataacttattggatgatccaaaagcaattattccaataagtgtattttggttggtacctcaatatt |
192 |
Q |
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| T |
34658316 |
ctgctaagtataacttattggatgatccaaaagcaattattccaataagtgtattttggttggtacctcaatatt |
34658242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 34645387 - 34645215
Alignment:
| Q |
20 |
tggaatcacgtgcatacaaagaatgggaattggatttataatcaacattatagccacattaatctcagcaccagttgaaatcaaaagaaaagaagttgct |
119 |
Q |
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| T |
34645387 |
tggaatcacatgtttacaaagaatgggagtagggtttgtggttaacattatagctactatagtttcagcactagtggaaacgaaaagaaaaacagttgct |
34645288 |
T |
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| Q |
120 |
gctaagtataacttattggatgatccaaaagcaattattccaataagtgtattttggttggtacctcaatatt |
192 |
Q |
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| T |
34645287 |
gcaaagtttaacttattggatgatccaaaagcaataatcccttttagtgtattttggttagtacctcaatatt |
34645215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 34665071 - 34664915
Alignment:
| Q |
36 |
caaagaatgggaattggatttataatcaacattatagccacattaatctcagcaccagttgaaatcaaaagaaaagaagttgctgctaagtataacttat |
135 |
Q |
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| T |
34665071 |
caaagaatgggaataggctttgtgattaacattatagccactatagtttcagcattggtggaaatcaaaagaaaaaaagttgcttccaaataccacttat |
34664972 |
T |
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| Q |
136 |
tggatgatccaaaagcaattattccaataagtgtattttggttggtacctcaatatt |
192 |
Q |
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| T |
34664971 |
tagatagtccaaaagcaattatccctataagtgtgttttggttggtacctcagtatt |
34664915 |
T |
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