View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_low_6 (Length: 429)
Name: NF3328_low_6
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 2065123 - 2064713
Alignment:
| Q |
1 |
ttaatactctagaccttctcttcacaaaaacgtcgtcgttatggatactacatttacaccaccgtcaccacaccgttcatctccgttacaaaacataagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2065123 |
ttaatactctagaccttctcttcacaaaaacgtcgtcgttatggatactacatttacaccaccgtcaccacaccgttcatctccgttacaaaacataagc |
2065024 |
T |
|
| Q |
101 |
cctagcattctcatcattataacaatcctcgccgtcaccgtcatcgtttctcttctaatctgcttcctcctccgccacctcaactgtcaccgtctccgcc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2065023 |
cctagcattctcatcattataacaatcctcgccgtcaccgtcatcgtttctcttctaatctgcttcctcctccgccacctcaactgtcaccgtctccgcc |
2064924 |
T |
|
| Q |
201 |
gtaatccatctccaacaaccaccgaacctcctcctcacactcacagccgtcgtatctctccagaaacaacacctccctccgtcatcgactcactccctct |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2064923 |
gtaatccatctccaacaaccaccgaacctcctcctcacactcacagccgtcgtatctctccagaaacaacacctccctccgtcatcgactcactccctct |
2064824 |
T |
|
| Q |
301 |
cttcacattctcatccatctcccgtcgttcctccgccgtcaccgccgctgattgcgctgtctgtttatcaaagttccgtaactccgacctcctccgttct |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2064823 |
cttcacattctcatccatctcccgtcgttcctccgccgtcaccgccgctgactgcgctgtctgtttatcaaagttccgtaactccgacctcctccgttct |
2064724 |
T |
|
| Q |
401 |
cttcctctctg |
411 |
Q |
| |
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||||||||||| |
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| T |
2064723 |
cttcctctctg |
2064713 |
T |
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