View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3328_low_7 (Length: 427)
Name: NF3328_low_7
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 45683060 - 45682656
Alignment:
| Q |
18 |
acaaatttcccatcatcatagttgtaagcgttaatgctttcaaaccaccttttgctttatttggataccattgtttacaattgttaaaatgattaaaata |
117 |
Q |
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| T |
45683060 |
acaaatttcccatcatcatagttgtaggcgttaatgctttcaaaccaccttttgctttatttggataccattgtttacaattgttaaaatgattaaaata |
45682961 |
T |
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| Q |
118 |
atttatacttaattagttctgcttgttagttatgaaagcctcccacatgataagataggctttgcaaaataaatgcaagattatagcaagnnnnnnngaa |
217 |
Q |
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| T |
45682960 |
gtttctacttaattagtactgcttgttagttatgaaagcctcccacatgataagataggctttgcaaaataaatgcaagattatagtaagtttttttgaa |
45682861 |
T |
|
| Q |
218 |
gactatatgaatattatttttgatgtaataaaactaaattattagcgtcatgcagtcaataaagaatacgaagatcaatgacacattttataactgaact |
317 |
Q |
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| T |
45682860 |
gactatatgaatattatttttgatgtaataaaaccaaattattagcgtcatgcagtcaataaagaatacgaagatcaatgacacattttataactgaact |
45682761 |
T |
|
| Q |
318 |
gatcctattacaatcatgtcatgtcatacatgatgtcattgaagcaatcaaattccaattctagtgttgtggtgtttaacttgttatgaattgttctgtg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
45682760 |
gatcctattacaatcatgtcatgtcatacatgatgtcattgaagcaatcaaattccaattctagtgttatggtgtttaacttgttatgaattgttctctg |
45682661 |
T |
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| Q |
418 |
ctgct |
422 |
Q |
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| T |
45682660 |
ctgct |
45682656 |
T |
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