View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3328_low_8 (Length: 393)
Name: NF3328_low_8
Description: NF3328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3328_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 31046538 - 31046161
Alignment:
| Q |
1 |
gatgacaagagtgtcccgaaaataatgaagggctggctgacaatttacacctcagacgacccaaaatcacctttcacaaaaacaagcgtgagaacacagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31046538 |
gatgacaagagtgtcccgaaaataatgaagggctggctgacaatttacacctcagacgacccaaaatcacctttcacaaaaacaagcgtgagaacacagg |
31046439 |
T |
|
| Q |
101 |
ttctaaacatagtaaaaagtttgttgaacaaatacaagaatgaaaatccaagtgtggtgctagtaggacatagtctaggtgcaagtttgtcaattgtgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31046438 |
ttctaaacatagtaaaaagtttgttgaacaaatacaagaatgaaaatccaagtgtggtgctagtaggacatagtctaggtgcaagtttgtcaattgtgag |
31046339 |
T |
|
| Q |
201 |
tgcttttgatttggtggagaacggtgtaacagacattcccgttactgcatttgtgtttgggtccccacaagttgggaacaaagctttcaatgataggttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31046338 |
tgcttttgatttggtggagaacggtgtaacagacattcccgttactgcatttgtgtttgggtccccacaagttgggaacaaagctttcaatgataggttc |
31046239 |
T |
|
| Q |
301 |
aaaaagtttcaaaatttgaaggttttgcatgtgaggaatgtgattgatcttataccacattatccagggaagttattg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31046238 |
aaaaagtttcaaaatttgaaggttttgcatgtgaggaatgtgattgatcttataccacattatccagggaagttattg |
31046161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University