View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3330_high_9 (Length: 232)
Name: NF3330_high_9
Description: NF3330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3330_high_9 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 270390 - 270181
Alignment:
| Q |
10 |
catcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaacagtgttcataacttcaaccgttggttctttttcagg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270390 |
catcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaacagtgttcataacttcaaccgttggttctttttcagg |
270291 |
T |
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| Q |
110 |
atcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaatttctcgaccattaccgatcgactcaccggacgccatcggtatgct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
270290 |
atcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaatttctcgaccattaccgatcgactcaccggccgccatcggtatgct |
270191 |
T |
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| Q |
210 |
tggttgaaaa |
219 |
Q |
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|||||||||| |
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| T |
270190 |
tggttgaaaa |
270181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 17588986 - 17589195
Alignment:
| Q |
10 |
catcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaacagtgttcataacttcaaccgttggttctttttcagg |
109 |
Q |
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||||||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17588986 |
catcatcagaaagataaatagaaagtttatcaggagggtaatccatagcaatagcagaaacaacagtgttcataacttctaccgttggttctttttcagg |
17589085 |
T |
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| Q |
110 |
atcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaatttctcgaccattaccgatcgactcaccggacgccatcggtatgct |
209 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| || || ||| ||||||| ||||| ||| | ||| |
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| T |
17589086 |
atcaatcgtacacacaaatatgtcgagtcccggtaacttctcttcagccggtaatttctcggtcatcactgaacgagtcaccggccgccaacggaacgct |
17589185 |
T |
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| Q |
210 |
tggttgaaaa |
219 |
Q |
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|||||||||| |
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| T |
17589186 |
tggttgaaaa |
17589195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 11999 - 11790
Alignment:
| Q |
10 |
catcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaacagtgttcataacttcaaccgttggttctttttcagg |
109 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
11999 |
catcatcagaaagataaatagaaagtttattagaagggtagtccattgcaatagcagaaataacagtgttcataacatcaaccgttggttctttttcagg |
11900 |
T |
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| Q |
110 |
atcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaatttctcgaccattaccgatcgactcaccggacgccatcggtatgct |
209 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| ||| || || ||| | ||| | | ||| ||| ||||| |
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| T |
11899 |
atcaatcgtacacacaaatatgtcgagtcccggtaacttctcgtcgggcggtaatttctcggtcataactgaacgatttaccagcctccaacggaatgct |
11800 |
T |
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| Q |
210 |
tggttgaaaa |
219 |
Q |
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|||||||||| |
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| T |
11799 |
tggttgaaaa |
11790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 16385834 - 16386037
Alignment:
| Q |
10 |
catcatcagaaagataaatagaaagcttattagaagggtaatccattgcaatagcagaaacaacagtgttcataacttcaaccgttggttctttttcagg |
109 |
Q |
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|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
16385834 |
catcatcagaaagataaatagaaagtttattacaagggtaatccattgcaatagcagaaacaacagtgttcataacatcaatagttggttctttttcagg |
16385933 |
T |
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| Q |
110 |
atcaatcgtacatacaaatatgtcgagtcccggtaacttctcgtcagccggtaatttctcgaccattaccgatcgactcaccggacgccatcggtatgct |
209 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||| ||| || |||||| | | ||| ||||| ||| ||||| |
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| T |
16385934 |
atcaattgtacacacaaatatgtcgagtcccggtaacttctcgtcggccggtaaattctcggtcataactgatcgagttatcggccgccaacggaatgct |
16386033 |
T |
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| Q |
210 |
tggt |
213 |
Q |
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|||| |
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| T |
16386034 |
tggt |
16386037 |
T |
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