View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3330_low_2 (Length: 475)
Name: NF3330_low_2
Description: NF3330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3330_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 36396989 - 36396517
Alignment:
| Q |
1 |
tatcgatgactcaaattctctgttactccgaaatccaaattatata---ctgatttagttttttaatataataataccaactacttgatctataacatgt |
97 |
Q |
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| T |
36396989 |
tatcgttgactcaaattctttgttactccgaaatccaaattatatagtactgatttagttttttaatataataataccaactacttgatctataacgtgt |
36396890 |
T |
|
| Q |
98 |
tgactaattga--gcaaaattccttgagtgttgggaatccatttgacccagtcacacccaaaattacataaaagatcataattgtaatattgcaacttgc |
195 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36396889 |
tgactaattgactgcaaaattccttgagtgttgggaatccatttgacccagtcacacccaaaattacataaaagatcataattgtaatattgcaacttgc |
36396790 |
T |
|
| Q |
196 |
aaaatttgggagtagacccactcaatttaaaatgacattaatcatgcataattttggaccctagcaccccggagacaaatttcaattttagtaactacca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36396789 |
aaaatttgggagtagacccactcaatttaaaatgacattaatcatgcataattttggaccctagcaccccggagacaaatttcaattttagtaactacca |
36396690 |
T |
|
| Q |
296 |
atagggtccagctcgagaatcattttttagaaaaagagaaagtgtccacagtgaatgaatttcaacggcaatacgcgtaagttagactccatttgatatt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36396689 |
atagggtccagctcgagaatcattttttagaaaaagagaaagtgtccacagtgaatgaatttcaacggcaatacgcgtaagttagactccatttgatatt |
36396590 |
T |
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| Q |
396 |
tcaatgttgctaataagaacctttttgtcaacagatattagagtatttagctaatgtttgagtaggatatgaa |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36396589 |
tcaatgttgctaataagaacctttttgtcaacagatattagagtatttagctaatgtttgagtaggatatgaa |
36396517 |
T |
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