View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3330_low_4 (Length: 430)
Name: NF3330_low_4
Description: NF3330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3330_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 36127789 - 36127391
Alignment:
| Q |
16 |
cacatcaccttactgcatccaactcagcggcgttaccgagtcaactcgtcctccaaaatccacaaccacacgcaagaaaagctccaacgaagttgcattc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36127789 |
cacatcaccttactgcatccaactcagcggcgttaccgagtcaactcgtcctccaaaatccacaaccacacgcaagaaaagctccaacgaagttgcattc |
36127690 |
T |
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| Q |
116 |
aaggagaagaaggatggtttcgtcgactacgacagaggacaccaccaagtctccaccaaaatatccggcctccgtaaagaagatatccccgctcactacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36127689 |
aaggagaagaaggatggtttcgtcgactacgacagaggacaccaccaagtctccaccaaaatatccggcctccgtaaagaagatatccccgctcactacc |
36127590 |
T |
|
| Q |
216 |
gcctccgtgttgccggtaagcgcttccaaaaggattggaccgtgtcggaggtcgtcgactccgtcctctccctcactctccgtgacgacattgaaggcct |
315 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36127589 |
gcctccgtgttgccggtaaccgcttccaaaaggattggaccgtgtcggaggtcgtcgactccgtcctctccctcactctccgtgacgacattgaaggcct |
36127490 |
T |
|
| Q |
316 |
gctcaatcgttggattggtcgattcgctcgcaagaatttccctttcctcatcagagtatcgcacttttcctttctcttcactcttccatgactacaact |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36127489 |
gctcaatcgttggattggtcgattcgctcgcaagaatttccctttcctcatcagagtatcgcactttacctttctcttcactcttccatgactacaact |
36127391 |
T |
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