View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3330_low_7 (Length: 279)

Name: NF3330_low_7
Description: NF3330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3330_low_7
NF3330_low_7
[»] chr6 (4 HSPs)
chr6 (123-233)||(31070199-31070314)
chr6 (1-58)||(31062022-31062079)
chr6 (123-165)||(31056992-31057034)
chr6 (123-186)||(31027342-31027405)


Alignment Details
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 233
Target Start/End: Original strand, 31070199 - 31070314
Alignment:
Q  123 tatataattaaaccaacttaaaattttcaaaattgtatctttttcacttttattgttgataaaatcctta-----tttcctttcgtaaatataatttcat 217  Q
    |||||||||||  ||||||||||||||||||||  |||||||||||||||||||||||||||||  ||||      |||||||  |||||||||||||||    
T  31070199 tatataattaagtcaacttaaaattttcaaaataatatctttttcacttttattgttgataaaaatcttactgtccttcctttaataaatataatttcat 31070298  T
Q  218 ttttacggtcctttgt 233  Q
    ||||||||||||||||    
T  31070299 ttttacggtcctttgt 31070314  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31062022 - 31062079
Alignment:
Q  1 tttcctataaaatacgaaagtggatcgagctcaccacacatcaaaggaggggaccaat 58  Q
    |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||    
T  31062022 tttcctataaaataggaaagtggatctaactcaccacacatcaaaggaggggaccaat 31062079  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 31056992 - 31057034
Alignment:
Q  123 tatataattaaaccaacttaaaattttcaaaattgtatctttt 165  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  31056992 tatataattaaaccaacttaaaattttcataatagtatctttt 31057034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 31027342 - 31027405
Alignment:
Q  123 tatataattaaaccaacttaaaattttcaaaattgtatctttttcacttttattgttgataaaa 186  Q
    ||||||||||||||| ||||||| ||| |||||  |||||| ||||| ||||||| ||||||||    
T  31027342 tatataattaaaccagcttaaaaattttaaaataatatcttattcacatttattgctgataaaa 31027405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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