View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3330_low_8 (Length: 266)
Name: NF3330_low_8
Description: NF3330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3330_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 6867901 - 6868149
Alignment:
| Q |
1 |
ccagccttctcaagagttttcctatgagtagttgcaatagaaacactgtctaaaacagcatcgactgcaacattggctaaacgattctgttcgtttaacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |||||||||||||||||||| |
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| T |
6867901 |
ccagccttctcaagagttttcctatgagtagttgcaatagaaacactgtctaaaacagcatccacggcaacatttgctagacgattctgttcgtttaacg |
6868000 |
T |
|
| Q |
101 |
gtacaccgagcttatcgaagtatctcaaaagctcagggtcagcttcttctaagctattaatctcgggtttgttcttgggagctgaataatagcatatatc |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6868001 |
gtacaccaagcttatcgaagtatctcaaaagctcaggatcagcttcttctaagctattaatctcgggtttgttcttaggagctgaataatagcatatatc |
6868100 |
T |
|
| Q |
201 |
ttgaaaatctatagttgggtatgtgttatctgaccaatttggttctttc |
249 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6868101 |
ttgaaaatctatagttgggtacgtgttatctgaccaatttggttctttc |
6868149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 14080868 - 14080620
Alignment:
| Q |
1 |
ccagccttctcaagagttttcctatgagtagttgcaatagaaacactgtctaaaacagcatcgactgcaacattggctaaacgattctgttcgtttaacg |
100 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||| || |||| |
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| T |
14080868 |
ccagccttctcaagtgtcttcctatgagtagttgcaatagaaacactgtctaaaacagcatctacagcaacattagctaatcgattctgttcattcaacg |
14080769 |
T |
|
| Q |
101 |
gtacaccgagcttatcgaagtatctcaaaagctcagggtcagcttcttctaagctattaatctcgggtttgttcttgggagctgaataatagcatatatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
14080768 |
gtacaccgagcttatcgaagtatctcaaaagctcaggatcagcttcttctaagctattaatcgagggtttgttcttaggagctgaataatagcatatatc |
14080669 |
T |
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| Q |
201 |
ttgaaaatctatagttgggtatgtgttatctgaccaatttggttctttc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14080668 |
ctgaaaatctatagttgggtatgtgttatctgaccaatttggttctttc |
14080620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 14390896 - 14390648
Alignment:
| Q |
1 |
ccagccttctcaagagttttcctatgagtagttgcaatagaaacactgtctaaaacagcatcgactgcaacattggctaaacgattctgttcgtttaacg |
100 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||| || |||| |
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| T |
14390896 |
ccagccttctcaagtgtcttcctatgagtagttgcaatagaaacactgtctaaaacagcatctacagcaacattagctaatcgattctgttcattcaacg |
14390797 |
T |
|
| Q |
101 |
gtacaccgagcttatcgaagtatctcaaaagctcagggtcagcttcttctaagctattaatctcgggtttgttcttgggagctgaataatagcatatatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
14390796 |
gtacaccgagcttatcgaagtatctcaaaagctcaggatcagcttcttctaagctattaatcgagggtttgttcttaggagctgaataatagcatatatc |
14390697 |
T |
|
| Q |
201 |
ttgaaaatctatagttgggtatgtgttatctgaccaatttggttctttc |
249 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14390696 |
ctgaaaatctatagttgggtatgtgttatctgaccaatttggttctttc |
14390648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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