View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3331_high_17 (Length: 231)
Name: NF3331_high_17
Description: NF3331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3331_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 38214386 - 38214183
Alignment:
| Q |
12 |
cagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagtaatatatatt |
111 |
Q |
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| T |
38214386 |
cagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagtaatatatatt |
38214287 |
T |
|
| Q |
112 |
taagttcgggtttgtataaagaactcaattatgtgtgtataacaaacactctaacaagttcatgtaactaaatgcagatttttggttgacaacaccccaa |
211 |
Q |
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| T |
38214286 |
taagttcgtgtttgtataaagaactcaattatgtgcttataacaaacacgctaacaagttcatgtaactaattgcagatttttggttgacaacaccccaa |
38214187 |
T |
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| Q |
212 |
taag |
215 |
Q |
| |
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|||| |
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| T |
38214186 |
taag |
38214183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 38218605 - 38218402
Alignment:
| Q |
12 |
cagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagtaatatatatt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218605 |
cagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagtaatatatatt |
38218506 |
T |
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| Q |
112 |
taagttcgggtttgtataaagaactcaattatgtgtgtataacaaacactctaacaagttcatgtaactaaatgcagatttttggttgacaacaccccaa |
211 |
Q |
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| T |
38218505 |
taagttcgtgtttgtataaagaactcaattatgtgcttataacaaacacgctaacaagttcatgtaactaattgcagatttttggttgacaacaccccaa |
38218406 |
T |
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| Q |
212 |
taag |
215 |
Q |
| |
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|||| |
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| T |
38218405 |
taag |
38218402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 42991143 - 42991214
Alignment:
| Q |
12 |
cagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagcc |
83 |
Q |
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||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
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| T |
42991143 |
cagagaacaacaattctacctctggtttgatcccaccaagaacttccacacttactctatcatctggaagcc |
42991214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 35017811 - 35017899
Alignment:
| Q |
13 |
agagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagt |
101 |
Q |
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|||||||||||||||||||| ||||| ||||| || | ||||||||||||||||| ||||| ||||| || |||||||| |||||||| |
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| T |
35017811 |
agagaacaacaattctacctatggtttgaccccactagaaacttccacacttactccatcatttggaaaccccaacacatcatgtaagt |
35017899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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