View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3331_low_11 (Length: 250)
Name: NF3331_low_11
Description: NF3331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3331_low_11 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 15217475 - 15217242
Alignment:
| Q |
1 |
acatattgctaaatcacaaattggatatgtgtttacatatggtggcactgcaatatcatgcagatctcaaaagcaaacacttgtagcaacttcttaaaat |
100 |
Q |
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| T |
15217475 |
acatattgctaaatcacaaactggatatgtgtttacatatggtggctctgcaatatcatgcagatctcaaaagcaaacacttgtagcaacttcttaaaat |
15217376 |
T |
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| Q |
101 |
catgttgaagtaatagccgtttatgaagcaagcaaatagtgtagatggttaagataagttacccaacatatccaaggagcgtctagttttaacagttaat |
200 |
Q |
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| T |
15217375 |
catgatgaagtaatagccgttcatgaagcaagcaaatagtgtagatggttaagataagttacccaacatatccaaggagcgtctag-tttaacagttaat |
15217277 |
T |
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| Q |
201 |
aagaatccaacaattttgtatgaagacaatgctgc |
235 |
Q |
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| T |
15217276 |
aagaatccaacaattttgtatgaagacaatgctgc |
15217242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 9044563 - 9044334
Alignment:
| Q |
1 |
acatattgctaaatcacaaattggatatgtgtttacatatggtggcactgcaatatcatgcagatctcaaaagcaaacacttgtagcaacttcttaaaat |
100 |
Q |
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| T |
9044563 |
acataatgctaaatcacaaactggatatgtgtttacatatggtggccctgcaatatcatggagatctcaaaagcaaacacttgtagcaacttcttcaaat |
9044464 |
T |
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| Q |
101 |
catgttgaagtaatagccgtttatgaagcaagcaaatagtgtagatggttaagataagttacccaacatatccaaggagcgtctagttttaacagttaat |
200 |
Q |
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| T |
9044463 |
catgctgaagtaatagcacttcatgaagcaagaaaagagtgtagatggttacgttcggttttgtgacatatccaaggagcgtct-ggtttaacagttgat |
9044365 |
T |
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| Q |
201 |
aagaatccaacaattttgtatgaagacaatg |
231 |
Q |
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| T |
9044364 |
aagaatccaacaatcttgtatgaagacaatg |
9044334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 17322 - 17545
Alignment:
| Q |
1 |
acatattgctaaatcacaaattggatatgtgtttacatatggtggcactgcaatatcatgcagatctcaaaagcaaacacttgtagcaacttcttaaaat |
100 |
Q |
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||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||| |
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| T |
17322 |
acataatgctaattcacaaactggatatgtgtttacatatggtggcactgcaatatcatgaagatctctaaagaaaacacttgtagcaacttcttcaaat |
17421 |
T |
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| Q |
101 |
catgttgaagtaatagccgtttatgaagcaagcaaatagtgtagatggttaagataagttacccaacatatccaaggagcgtctagttttaacagttaat |
200 |
Q |
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| T |
17422 |
catgctgaagtaataacccttcatgaagcaagcaaagagtgtagatggttaagttcagttttgcgacatatccaaggagcgtct-ggtttaacaattaat |
17520 |
T |
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| Q |
201 |
aagaatccaacaattttgtatgaaga |
226 |
Q |
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| T |
17521 |
aagaacccaataa-tttgtatgaaga |
17545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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