View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3331_low_14 (Length: 242)
Name: NF3331_low_14
Description: NF3331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3331_low_14 |
 | |
|
| [»] scaffold0221 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 15217769 - 15217986
Alignment:
| Q |
1 |
tcaaacattaagtgttctacctatcattgaagtattcatagtgtttgtcttgtccatattaaactcttttaatactctctctgcataatttgattaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
15217769 |
tcaaacattaagtgttctacctatcattgaagtactcagagtgtttgtcttgtccatattaaacccttttaatactctctctgcataatttgattgatgt |
15217868 |
T |
|
| Q |
101 |
actaatatacca-ttttttaatgtactcaatttgtagagaaaatcataacatagtttttccccaatctttcatttcaaattctttaagtactctcttact |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15217869 |
actaatataccatttttttaatgtactcaatttgtagagaaaatcataacctagtttttccccaatctttcatttcaaattctttaagtactctcttact |
15217968 |
T |
|
| Q |
200 |
tctttaatttcttcatta |
217 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15217969 |
tctttaatttcttcatta |
15217986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 17024 - 16817
Alignment:
| Q |
8 |
ttaagtgttctacctatcattgaagtattcatagtgtttgtcttgtccatattaaactcttttaatactctctctgcataatttgattaatgtactaata |
107 |
Q |
| |
|
||||||||||| || |||||||||||| | | || ||||| ||||||||| |||||| |||||| ||||||| || ||||||||||| |||||| |||| |
|
|
| T |
17024 |
ttaagtgttcttcccatcattgaagtacttaaagggtttgccttgtccatgttaaacctttttaacactctctatgtataatttgattgatgtaccaata |
16925 |
T |
|
| Q |
108 |
taccattttttaatgtactcaatttgtagagaaaatcataacatagtttttccccaatctttcatttcaaa----ttctttaagtactctcttacttctt |
203 |
Q |
| |
|
||||| | |||| | ||||||||||||| | || || ||| |||||||||| ||||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
16924 |
tacca-tctttattatactcaatttgtaaaccaaggcagaacctagtttttcctggatctttcatttcaaattctttctttaagtactcttctgcttctt |
16826 |
T |
|
| Q |
204 |
taatttctt |
212 |
Q |
| |
|
||||||||| |
|
|
| T |
16825 |
taatttctt |
16817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University