View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3331_low_2 (Length: 594)
Name: NF3331_low_2
Description: NF3331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3331_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 576
Target Start/End: Original strand, 36376818 - 36377362
Alignment:
| Q |
19 |
gcataagcagaaaagcataa---ccattaatatacatatataaggtagctaactactaaggtagcaactagttgttattcttttgattaagcctagctgc |
115 |
Q |
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| T |
36376818 |
gcataagcagaaaagcataataaccattaatatacatatataaggtagctaactacttaggtagcaactagttgttattcttttggttaagcctagctgc |
36376917 |
T |
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| Q |
116 |
ggctgccattgatgcagacactcctccaggatgagtagtgagatatggatcatttctcatttctgcacccgtcaccccttcagcgtctctccttgtcgct |
215 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
36376918 |
ggctgccattgatgctgacactcctccaggatgagtagtgagatatggatcatttctcatttctgcacccgtcaccccttcggcatctctccttgtcgct |
36377017 |
T |
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| Q |
216 |
gctctatctgccggtaactttgtagtcgcgtcctgcatcattataacaattcaaatatattagcaacctaaaattcttgtatgtgcagatagtaaaaaat |
315 |
Q |
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| T |
36377018 |
gctctatctgccggtaactttgtagtcgcgtcctgcatcattataacaattcaaatat------aacctaaaattcttgtatgtgcggatagtaaaaaat |
36377111 |
T |
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| Q |
316 |
aactgcaaagatgtttgatgttggagcgcagatttaaatctgcaattctgcactttcaagtatttagtgtgtataacttttgtagcaagactctttaaat |
415 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36377112 |
aactgcaaagatgtttgatgttggagagcggatttaaatctgcaactctgcactttcaagtatttagtgtgtataacttttgttgcaagactctttaaa- |
36377210 |
T |
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| Q |
416 |
gtnnnnnnntgtctggtatgtaccgcaagaatatcaccaagtttggtcttgtcctcttcctttgtggttcgagcattgagagttgcggctgattgtgctg |
515 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36377211 |
---------tgtctggtatgtaccgcaagaatatcaccgagtttggtcttgtcctcttcctttgtggttcgagcattgagagttgcagctgattgtgctg |
36377301 |
T |
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| Q |
516 |
ccgcggcaacacctccagggacgatgttagtgcgccctgtggctctgacttctgctgcttg |
576 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36377302 |
ccgcggcaacacctccagggacgatgttagtgcgccctgtggctctgacttctgctgcttg |
36377362 |
T |
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