View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3331_low_3 (Length: 497)
Name: NF3331_low_3
Description: NF3331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3331_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 21132349 - 21131870
Alignment:
| Q |
1 |
agtttgtggtacttttgcgaattgattcgcctcaatcatgtagatagttcgttgaactgaggacacgagttctctctcggttaaaagtatcatgaacaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21132349 |
agtttgtggtacttttgcgaattgatttgcctcaatcatgtagatagttcgttgaattgaagacacgagttctctctcggttaaaagtatcatgaacaag |
21132250 |
T |
|
| Q |
101 |
agtgagattgtttatgagaatagaaaataaataaatgaagcaaattccgactcatgattatactccaatctagatattgtgtctatcaataataaatata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21132249 |
agtgagattgtttatgagaatagaaaataaataaatgaagcaaattccgactcatgattatactccaatctagatattgtgtctatcaataataaatata |
21132150 |
T |
|
| Q |
201 |
ctatcattctagctatctaatttt-atctcctctaatttcttcgtctcgttataaattctaacaggtaagctctcaaagcttttcctcttaaaaacaggt |
299 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
21132149 |
ctatcattctagctatctaatttttatctcctctaatttcttcgtctcgttataaattctaacaggtaagctctcaaagcttttcctcttaaacaatggt |
21132050 |
T |
|
| Q |
300 |
aacatcctcttgcttgatgcgggtcaacactacacttggtcatcaaacacggcatcagatactccattagagttgtatctcaaagaagatggtaatcttg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
21132049 |
aacatcctcttgcttgatgcgggtcaacactacacttggtcttcaaacacggcatcagatgctccgttagagttgtatctcaaagaagatggtaatcttg |
21131950 |
T |
|
| Q |
400 |
tgttacgtgagcttcaaggaactaccattttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaacca |
479 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
21131949 |
tgttacgtgagcttcaaggaagtaccattttgtggcaaagctatgatttcccaaccaatactctccttcctaatcaacca |
21131870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 260 - 478
Target Start/End: Complemental strand, 18660251 - 18660033
Alignment:
| Q |
260 |
aacaggtaagctctcaaagcttttcctcttaaaaacaggtaacatcctcttgcttgatgcgggtcaacactacacttggtcatcaaacacggcatcagat |
359 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| || |
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|
| T |
18660251 |
aacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgcttgatgcgggtcaacacaacacttggtcttcaaacacagcatcaaat |
18660152 |
T |
|
| Q |
360 |
actccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccattttgtggcaaagctatgatttcccaacaaata |
459 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
18660151 |
gcttcattagagttgtatctcaaagaagatggtaatcttgtattacgtgagcttcaaggaactaccatcttgtggcaaagctatgatttcccaacaaata |
18660052 |
T |
|
| Q |
460 |
ctctccttcctaatcaacc |
478 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18660051 |
ctctccttcctaatcaacc |
18660033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 202 - 478
Target Start/End: Complemental strand, 21113190 - 21112911
Alignment:
| Q |
202 |
tatcattctagctatctaattttatctcctctaattt-ct--tcgtctcgttataaattctaacaggtaagctctcaaagcttttcctcttaaaaacagg |
298 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| || || |||| || | | ||| |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
21113190 |
tatcattctaggaatctagttttatctcctctaattttctaatcttctccttgtgatttccgacaggtaaaaactcaaagcttttcctcttaaacacagg |
21113091 |
T |
|
| Q |
299 |
taacatcctcttgcttgatgcgggtcaacactacacttggtcatcaaacacggcatcagatactccattagagttgtatctcaaagaagatggtaatctt |
398 |
Q |
| |
|
||||||| ||||||| |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| | ||||||||| |||||| |
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|
| T |
21113090 |
taacatcatcttgctcgatgcgggtcaacataacacttggtcttcaaacacggcatcagatgctccattagagttgtatcttagagaagatgggaatctt |
21112991 |
T |
|
| Q |
399 |
gtgttacgtgagcttcaaggaactaccattttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaacc |
478 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21112990 |
gtgttacgtgagcttcaaggacctaccatcttgtggcaaagctatgatttcccgacaaatactctccttcctaatcaacc |
21112911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 344 - 478
Target Start/End: Complemental strand, 21124442 - 21124308
Alignment:
| Q |
344 |
aaacacggcatcagatactccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccattttgtggcaaagctat |
443 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |
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|
| T |
21124442 |
aaacacagcatcagatgctccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaagaactaccattttgggggaaagctat |
21124343 |
T |
|
| Q |
444 |
gatttcccaacaaatactctccttcctaatcaacc |
478 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21124342 |
gatttcccaacaaattctctccttcctaatcaacc |
21124308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 469
Target Start/End: Original strand, 21106849 - 21106951
Alignment:
| Q |
367 |
tagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccattttgtggcaaagctatgatttcccaacaaatactctcct |
466 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||||||| |||||||||||||||| || ||||||||||| || | ||| | |||||| |||||||||| |
|
|
| T |
21106849 |
tagagttgcatctcaaagatgatggaaatcttgtgttgcgtgagcttcaaggaatcacaattttgtggcagagttttgactctccaacagatactctcct |
21106948 |
T |
|
| Q |
467 |
tcc |
469 |
Q |
| |
|
||| |
|
|
| T |
21106949 |
tcc |
21106951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 469
Target Start/End: Original strand, 21097226 - 21097332
Alignment:
| Q |
363 |
ccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccattttgtggcaaagctatgatttcccaacaaatactc |
462 |
Q |
| |
|
|||||||| ||| |||||||| | ||||| ||||||||||| |||||||||||||||| | |||||||||||| || | ||| | |||||| |||||| |
|
|
| T |
21097226 |
ccattagaattgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactc |
21097325 |
T |
|
| Q |
463 |
tccttcc |
469 |
Q |
| |
|
||||||| |
|
|
| T |
21097326 |
tccttcc |
21097332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 160 - 478
Target Start/End: Original strand, 39130547 - 39130865
Alignment:
| Q |
160 |
atactccaatctagatattgtgtctatcaataataaatatactatcattctagctatctaattttatctcctctaatttcttcgtctcgttataaattct |
259 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||||||| ||| ||| ||| ||| |||| ||||||||||||||| ||||| | | | ||| ||| |
|
|
| T |
39130547 |
atactacaatcttgatattgtgtctattaataataaaaatattatgattttagatatccaattttatctcctctgatttcctaattgtctcctaatttca |
39130646 |
T |
|
| Q |
260 |
aacaggtaagctctcaaagcttttcctcttaaaaacaggtaacatcctcttgcttgatgcgggtcaacactacacttggtcatcaaacacggcatcagat |
359 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||| |||||| || ||| |||||| |||||||| | |||| | |
|
|
| T |
39130647 |
aacaggtaagctctcaaagctttccctcttaaacacaggtaatatccttttgcttgatgccggtcaaaacaacatttggtcttcaaacacagaatcaaac |
39130746 |
T |
|
| Q |
360 |
actccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccattttgtggcaaagctatgatttcccaacaaata |
459 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
39130747 |
actccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaaggtactacgatcttgtggcaaagctatgattttccaacaaata |
39130846 |
T |
|
| Q |
460 |
ctctccttcctaatcaacc |
478 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39130847 |
ctctccttcctaatcaacc |
39130865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 476
Target Start/End: Complemental strand, 26700156 - 26700107
Alignment:
| Q |
427 |
ttttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaa |
476 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
26700156 |
ttttgtggcaaagttttgatttcccaacagatactctccttcctgatcaa |
26700107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 476
Target Start/End: Complemental strand, 26735313 - 26735264
Alignment:
| Q |
427 |
ttttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaa |
476 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
26735313 |
ttttgtggcaaagttttgatttcccaacagatactctccttcctgatcaa |
26735264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 476
Target Start/End: Original strand, 26693259 - 26693308
Alignment:
| Q |
427 |
ttttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaa |
476 |
Q |
| |
|
||||||||||||||| |||||| |||||| |||| ||||||||| ||||| |
|
|
| T |
26693259 |
ttttgtggcaaagctttgattttccaacagataccctccttcctgatcaa |
26693308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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