View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3331_low_4 (Length: 387)
Name: NF3331_low_4
Description: NF3331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3331_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 45403127 - 45403498
Alignment:
| Q |
1 |
cacttcatacttttgacctatgttgttgtcgttatcatcactctcactctccatggttgaatcaaaaagtcttcggcccttcaattttcctctctcaata |
100 |
Q |
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| T |
45403127 |
cacttcataattttgacctatgttgttgtcgttatcatcactctcactctccatggttgaatcaaaaagtcttcggcccttcaattttcctctctcaata |
45403226 |
T |
|
| Q |
101 |
gcttctctacgttcttggagagtctctctagctgccacatcatgattcttccatgtttcttcttctgatgatgaagaatctctttgaagactaaacatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45403227 |
gcttctctacgttcttggagagtctctctagctgccacatcatgattcttccatgtttcttcttctgatgatgaagaatctctttgaagactaaacatga |
45403326 |
T |
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| Q |
201 |
gttctctaggagaaataatgctgttattaatttctagccctaggttttgaaaaataggttttgtggcgatgtttaaaggagaacgatattttcgtgaagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45403327 |
gttctctaggagaaataatgctgttattaatttctagccctaggttttgaaaaataggttttgtggcgatgtttaaaggggaacgatattttcgtgaagt |
45403426 |
T |
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| Q |
301 |
tgttgatcttgattccttaaacgcgttccaatcttgttctagtttcttgtatttctgatgaagttctcttgt |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45403427 |
tgttgatcttgattccttaaacgcgttccaatcttgttctagtttcttgtatttctgatgaagttctcttgt |
45403498 |
T |
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