View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3331_low_5 (Length: 353)
Name: NF3331_low_5
Description: NF3331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3331_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 62 - 320
Target Start/End: Original strand, 16698725 - 16698979
Alignment:
| Q |
62 |
tttctttcaacacggcaaagaacacatgcttttagcaatttcaaataaataacctgcaatattttcttccaccaagacgtgaatctgattgccttaggtc |
161 |
Q |
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| T |
16698725 |
tttctttcatcacggcaaagaacacatgcttttagcaatttcaaataaataacctgcaatattttcttccaccacgacatgaatctgattgccttaagtc |
16698824 |
T |
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| Q |
162 |
ccaacttaagacaaataatgaacgtgcaaatctagaattcatatttggaattaactgtgatgaaagtaacgggcctttgattgcttcagcaaatagatta |
261 |
Q |
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| T |
16698825 |
ccaactgaagacaaataatgaaagtgcaaatctagagttcagatttggaattgactctgatgaaagtaacgggcctttgattgcttcagcaaaaagatta |
16698924 |
T |
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| Q |
262 |
accagagtacgttgatcccttggctccatattctatttctttagaattaacttaaatta |
320 |
Q |
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| T |
16698925 |
accaga----gttgatcccttggctccatattctatttctttagaattaacttcaatta |
16698979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 99 - 268
Target Start/End: Original strand, 38228315 - 38228486
Alignment:
| Q |
99 |
atttcaaataaataacctgcaatattttcttccaccaagacgtgaatctgattgccttaggtcccaacttaagacaaataatgaacgtgcaaatctagaa |
198 |
Q |
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| T |
38228315 |
atttcaaataaataatctgcaatattttcttccactaagacttgaatctgattgcctgaagtcccaactgaagataaataatgaaagagcaaatctagag |
38228414 |
T |
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| Q |
199 |
ttcatatttggaattaactg--tgatgaaagtaacgggcctttgattgcttcagcaaatagattaaccagag |
268 |
Q |
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| T |
38228415 |
ctccgatttggacttggctgactgatgaaagcaacgggcctttgattgcttcggcgaacagattaaccagag |
38228486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 38228150 - 38228204
Alignment:
| Q |
1 |
aaaagataagccaagctaaatcagaataatgtaaaatttattcagataatgaggc |
55 |
Q |
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| T |
38228150 |
aaaagagaagccaagctaaaccagaatagtgtaaactttattaagatcatgaggc |
38228204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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