View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3331_low_8 (Length: 270)

Name: NF3331_low_8
Description: NF3331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3331_low_8
NF3331_low_8
[»] chr3 (2 HSPs)
chr3 (108-267)||(14757579-14757738)
chr3 (1-109)||(14757412-14757520)
[»] chr1 (2 HSPs)
chr1 (108-264)||(3613756-3613912)
chr1 (4-109)||(3613592-3613697)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 108 - 267
Target Start/End: Original strand, 14757579 - 14757738
Alignment:
Q  108 tggggtaggttgtggtattatgcctcatccaacttcaagaatgatgaaagagtattgctggactgattcttttgcgaagcaagagaatgttagggcttgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14757579 tggggtaggttgtggtattatgcctcatccaacttcaagaatgatgaaagagtattgctggactgattcttttgcgaagcaagagaatgttagggcttgt 14757678  T
Q  208 ttagcttgggagaaggagatgtgttccggaaagccgatgaacgtgatttgcttgaatatt 267  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  14757679 ttagcttgggagaaggagatgtgttccggaaagccgacgaacatgatttgcttgaatatt 14757738  T

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Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 14757412 - 14757520
Alignment:
Q  1 ttaaatgctgataacatgtctgtcactgatgttgcttggaggaatcttaacgatgtcgatatggatcgggtgagtttgaagataaatgaatacagtatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14757412 ttaaatgctgataacatgtctgtcactgatgttgcttggaggaatcttaacgatgtcgatatggatcgggtgagtttgaagataaatgaatacagtatgc 14757511  T
Q  101 aacaacttg 109  Q
    |||||||||    
T  14757512 aacaacttg 14757520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 108 - 264
Target Start/End: Original strand, 3613756 - 3613912
Alignment:
Q  108 tggggtaggttgtggtattatgcctcatccaacttcaagaatgatgaaagagtattgctggactgattcttttgcgaagcaagagaatgttagggcttgt 207  Q
    ||||||||||| |||||||||||||||||||||||||||||   ||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||    
T  3613756 tggggtaggttctggtattatgcctcatccaacttcaagaaccttgaaagagtattgttggacggattcttttgcaaatcaagagaatgttagggcttgt 3613855  T
Q  208 ttagcttgggagaaggagatgtgttccggaaagccgatgaacgtgatttgcttgaat 264  Q
    |||||||||||||| ||||  ||||| ||||| ||||||||||||||||||||||||    
T  3613856 ttagcttgggagaaagagacatgttctggaaaaccgatgaacgtgatttgcttgaat 3613912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 3613592 - 3613697
Alignment:
Q  4 aatgctgataacatgtctgtcactgatgttgcttggaggaatcttaacgatgtcgatatggatcgggtgagtttgaagataaatgaatacagtatgcaac 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||   ||||| ||| |||||||||||||||||||||||||||||    
T  3613592 aatgctgataacatgtctgtcactgatgttgcttggaggaatctcaacgatgtcgctagtaatcggttgaatttgaagataaatgaatacagtatgcaac 3613691  T
Q  104 aacttg 109  Q
    ||||||    
T  3613692 aacttg 3613697  T

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