View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3331_low_9 (Length: 262)
Name: NF3331_low_9
Description: NF3331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3331_low_9 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 4141432 - 4141693
Alignment:
| Q |
1 |
catttccgactcttcttctatttcgtcttttttgcccttgaaattgttttacaatgtggagtttctacgcgcgcaagttgtggtacaaacacccttgaaa |
100 |
Q |
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| T |
4141432 |
catttccgactcttcttctatttcgtcttttttgcccttgaaattgttttacaatgtggagtttctacgcgcacaagtcgcggtacaaacacccttgaaa |
4141531 |
T |
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| Q |
101 |
ttgtttgactatgtcgcgccggtacaaacacctgaacaacaagacactgctcagtttttcaatttaactcatatggagcttagctttgagaaggaggatg |
200 |
Q |
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| T |
4141532 |
ttgtttgactatgtcgcaccagtacaaacatctgaacaacaagacactactcagtttttcaatttaactcatatggagcttagctttgagaaggaggatg |
4141631 |
T |
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| Q |
201 |
aggaatattatcattgggattggttgaagaaattcatctgcgcctgcccctctcttcaaagt |
262 |
Q |
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| T |
4141632 |
aggaatattatcattgggattggttgaagaaattcatccgcgcctgcccctctcttcaaagt |
4141693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 3855191 - 3854945
Alignment:
| Q |
1 |
catttccgactcttcttctatttcgtcttttttgcccttgaaattgttttacaatgtggagtttctacgcgcgcaagttgtggtacaaacacccttgaaa |
100 |
Q |
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| T |
3855191 |
catttctgactcttcttctatttcttatttttttcccttgaaattgttttacaatgtggagtttctacgcgcacaagtagcggtacgaaaacccttgaaa |
3855092 |
T |
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| Q |
101 |
ttgtttgactatgtcgcgccggtacaaacacctgaacaacaagacactgctcagtttttcaatttaactcatatggagcttagctttgagaaggaggatg |
200 |
Q |
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| T |
3855091 |
ttgtttaactatgtcgcgccagtacagacaact------------------cagtttttcaatttaactcatgtggagcttagctttgagaaagaggatg |
3855010 |
T |
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| Q |
201 |
aggaatatta---tcattgggattggttgaagaaattcatctgcgcctgcccctctcttcaaagt |
262 |
Q |
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| T |
3855009 |
aggaatattattgtcgttgggattggttgaagaagttcatccgcgcctgcccctctcttcaaagt |
3854945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 1882185 - 1882232
Alignment:
| Q |
135 |
aacaacaagacactgctcagtttttcaatttaactcatatggagctta |
182 |
Q |
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| T |
1882185 |
aacatcaagacactactcaatttctcaatttaactcatatggagctta |
1882232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 1882267 - 1882311
Alignment:
| Q |
214 |
ttgggattggttgaagaaattcatctgcgcctgcccctctcttca |
258 |
Q |
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| T |
1882267 |
ttgggattggttaaacaaattcgtctccgcctgcccctctcttca |
1882311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 41542054 - 41542101
Alignment:
| Q |
135 |
aacaacaagacactgctcagtttttcaatttaactcatatggagctta |
182 |
Q |
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| T |
41542054 |
aacatcaagacactactcaatttctcaatttaactcatatggagctta |
41542101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 25126882 - 25126846
Alignment:
| Q |
159 |
tcaatttaactcatatggagcttagctttgagaagga |
195 |
Q |
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| T |
25126882 |
tcaatttaactcatatggagcttaggtttgaggagga |
25126846 |
T |
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