View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3332_high_1 (Length: 644)

Name: NF3332_high_1
Description: NF3332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3332_high_1
NF3332_high_1
[»] chr6 (16 HSPs)
chr6 (15-623)||(17205945-17206553)
chr6 (11-425)||(34659170-34659589)
chr6 (102-253)||(21689460-21689611)
chr6 (99-201)||(19730894-19730996)
chr6 (179-243)||(10481539-10481603)
chr6 (187-250)||(19490305-19490368)
chr6 (299-346)||(20395885-20395932)
chr6 (120-250)||(4311978-4312107)
chr6 (299-346)||(20395566-20395613)
chr6 (299-352)||(20395206-20395259)
chr6 (101-250)||(20396308-20396456)
chr6 (224-275)||(19122500-19122551)
chr6 (299-346)||(20396203-20396250)
chr6 (101-203)||(27167291-27167391)
chr6 (122-226)||(10815295-10815398)
chr6 (99-147)||(20396093-20396141)
[»] chr8 (15 HSPs)
chr8 (13-435)||(18565166-18565591)
chr8 (54-253)||(21838294-21838493)
chr8 (11-253)||(23433463-23433703)
chr8 (12-204)||(20267743-20267934)
chr8 (12-204)||(21054372-21054563)
chr8 (101-250)||(5825255-5825403)
chr8 (136-253)||(13644651-13644768)
chr8 (136-253)||(13745076-13745193)
chr8 (102-202)||(211406-211506)
chr8 (102-202)||(240750-240850)
chr8 (102-202)||(725029-725129)
chr8 (102-202)||(794105-794205)
chr8 (299-368)||(5825135-5825202)
chr8 (144-250)||(23586710-23586815)
chr8 (135-211)||(24309176-24309251)
[»] chr3 (17 HSPs)
chr3 (19-382)||(10878319-10878686)
chr3 (131-253)||(16201799-16201919)
chr3 (102-253)||(8711821-8711972)
chr3 (102-253)||(9063708-9063859)
chr3 (121-253)||(10917651-10917780)
chr3 (195-275)||(21528691-21528773)
chr3 (137-250)||(11073825-11073937)
chr3 (122-281)||(10922845-10923007)
chr3 (189-250)||(27486601-27486662)
chr3 (101-225)||(13178470-13178594)
chr3 (227-275)||(15332024-15332072)
chr3 (181-253)||(20736632-20736704)
chr3 (122-253)||(20747259-20747387)
chr3 (122-249)||(14427633-14427759)
chr3 (177-249)||(5628601-5628674)
chr3 (11-48)||(9323147-9323184)
chr3 (137-209)||(4768210-4768281)
[»] chr5 (17 HSPs)
chr5 (11-250)||(22747793-22748031)
chr5 (136-275)||(9823637-9823776)
chr5 (137-281)||(19570247-19570391)
chr5 (136-250)||(24495137-24495249)
chr5 (174-339)||(18303659-18303828)
chr5 (134-275)||(22797709-22797850)
chr5 (122-338)||(24885848-24886075)
chr5 (166-346)||(12063278-12063464)
chr5 (144-250)||(24515482-24515586)
chr5 (125-247)||(28759849-28759970)
chr5 (101-224)||(24163079-24163201)
chr5 (177-249)||(17607761-17607835)
chr5 (177-249)||(17618376-17618450)
chr5 (306-354)||(9823552-9823601)
chr5 (305-334)||(12046548-12046577)
chr5 (13-94)||(19570152-19570233)
chr5 (104-184)||(12046685-12046765)
[»] chr7 (8 HSPs)
chr7 (109-275)||(19143407-19143573)
chr7 (109-275)||(20742806-20742972)
chr7 (120-250)||(22974587-22974716)
chr7 (120-211)||(19414082-19414173)
chr7 (21-275)||(2277601-2277854)
chr7 (312-347)||(20052633-20052668)
chr7 (177-249)||(1782500-1782573)
chr7 (299-347)||(10984185-10984233)
[»] chr1 (8 HSPs)
chr1 (19-253)||(12439759-12439992)
chr1 (136-250)||(19019801-19019914)
chr1 (298-346)||(39476562-39476610)
chr1 (135-253)||(24285953-24286075)
chr1 (180-250)||(12669814-12669884)
chr1 (166-349)||(9757155-9757347)
chr1 (299-344)||(19475016-19475061)
chr1 (49-97)||(24006823-24006871)
[»] chr4 (8 HSPs)
chr4 (13-274)||(22317193-22317453)
chr4 (122-253)||(22223400-22223529)
chr4 (151-250)||(8911036-8911134)
chr4 (99-201)||(18777238-18777339)
chr4 (122-243)||(21588979-21589098)
chr4 (101-225)||(39981163-39981287)
chr4 (152-223)||(19052737-19052807)
chr4 (177-223)||(5718871-5718917)
[»] chr2 (16 HSPs)
chr2 (11-253)||(8684985-8685226)
chr2 (13-253)||(16152809-16153046)
chr2 (136-275)||(26655295-26655434)
chr2 (135-253)||(17418178-17418295)
chr2 (102-368)||(21822846-21823116)
chr2 (12-210)||(26653869-26654067)
chr2 (136-250)||(21770253-21770366)
chr2 (136-250)||(19563955-19564068)
chr2 (135-253)||(24216647-24216765)
chr2 (186-253)||(16157998-16158065)
chr2 (176-250)||(21548980-21549054)
chr2 (137-330)||(21823740-21823939)
chr2 (123-250)||(27766113-27766239)
chr2 (301-334)||(24216861-24216894)
chr2 (178-250)||(17435627-17435699)
chr2 (15-97)||(22132760-22132844)
[»] scaffold0211 (2 HSPs)
scaffold0211 (105-298)||(25059-25254)
scaffold0211 (12-80)||(25250-25318)
[»] scaffold0711 (2 HSPs)
scaffold0711 (104-275)||(2226-2397)
scaffold0711 (12-97)||(2163-2248)
[»] scaffold0084 (3 HSPs)
scaffold0084 (115-275)||(30601-30761)
scaffold0084 (111-253)||(18067-18209)
scaffold0084 (12-78)||(17997-18063)
[»] scaffold0004 (2 HSPs)
scaffold0004 (117-248)||(382174-382305)
scaffold0004 (15-78)||(382315-382378)
[»] scaffold0062 (1 HSPs)
scaffold0062 (102-253)||(1048-1199)
[»] scaffold0772 (1 HSPs)
scaffold0772 (304-354)||(360-410)
[»] scaffold0527 (2 HSPs)
scaffold0527 (136-253)||(1160-1278)
scaffold0527 (136-253)||(9223-9341)
[»] scaffold0578 (1 HSPs)
scaffold0578 (299-344)||(5870-5915)
[»] scaffold0300 (1 HSPs)
scaffold0300 (101-250)||(11458-11606)
[»] scaffold0032 (1 HSPs)
scaffold0032 (298-347)||(78640-78689)
[»] scaffold0002 (1 HSPs)
scaffold0002 (101-225)||(128394-128518)
[»] scaffold0121 (1 HSPs)
scaffold0121 (130-227)||(10796-10892)


Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 15 - 623
Target Start/End: Complemental strand, 17206553 - 17205945
Alignment:
Q  15 aaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtttctt 114  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17206553 aaagggaagtctcttggagttgtccttgaacaagaagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtttctt 17206454  T
Q  115 gtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggct 214  Q
    |||||| ||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  17206453 gtagttgtgcttgagcattgagaagtcacttggaagagtccttgatcagtatgtaatccagagtgattgtggtgaaatcccttggaagtgcaagtgggct 17206354  T
Q  215 gaactactcctatgttgtgggaggaaccagtataaaattactctgtgtgtgctttctctctaactctttatttttctgttatgttttccgctgcattcag 314  Q
    ||||||||||||| ||||||||||||| |||||||||||||| ||| ||   | ||||||||||||||||||||| ||||||||||||||||||||||||    
T  17206353 gaactactcctatattgtgggaggaactagtataaaattactgtgtctgctttctctctctaactctttatttttgtgttatgttttccgctgcattcag 17206254  T
Q  315 actctgagtcagaatctgcaacatccgattctgactaggtattttataaacactaaagaaaaagaaacttttaaaatgacaacaaaattcaatttccctt 414  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| | |||||||||||||  | ||||    
T  17206253 actctgagtcagaatctacaacatccgattctgactagatattttataaacaccaaagaaaaagaaactcttaaaacggcaacaaaattcaacattcctt 17206154  T
Q  415 cttgtgttttttccaccttcacatctcccctcccccttcaaaggataaacattggaggcctaatatcgagcactttgcctactagatttgaaataaagtt 514  Q
    ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17206153 cttgtgtttttccaaccttcacatctcccctcccccttcaaaggctaaacattggaggcctaatatcgagcactttgcctactagatttgaaataaagtt 17206054  T
Q  515 ctcaggtaagaacaatagtacccactgtgacgtcacggtaaaattgtttccttgacgttgttttaccaacatgaattagatagtatgatctgcggataat 614  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17206053 ctcaggtaagaacaatagtacccactgtgacgtcacagtaaaattgtttccttgacgttgttttaccaacatgaattagatagtatgatctgcggataat 17205954  T
Q  615 gagacgttg 623  Q
    |||||||||    
T  17205953 gagacgttg 17205945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 11 - 425
Target Start/End: Complemental strand, 34659589 - 34659170
Alignment:
Q  11 aagcaaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtt 110  Q
    ||||||| ||||||||| |||||||||||||  |||| || || ||| |||||||| |||||  |||||||||||| || |||| |||| || | ||||     
T  34659589 aagcaaatggaagtctcttggagttgtccttggacaagaaatccttaagtagtgtcctagagt-ggaagtcttaagcaggtgtgtttaagcacataagtc 34659491  T
Q  111 tcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaaggg 210  Q
    ||||| |||| ||||||||||  |||||||||| |||||| |||||||| ||||  |||||||| ||||||||| |||||||||||| |||||  |||||    
T  34659490 tcttgcagttgtgcttgaacaaagagaagtctcctggaagtgtccttgagcaatgcgtaatccatagtgattatagtgaaatcccttagaagtacaaggg 34659391  T
Q  211 ggctgaactactcctatgttgtgggaggaaccagtataaaat-tactctgtgtgtgctttc----tctctaactctttatttttctgttatgttt-tccg 304  Q
    | ||| ||||||| | |||||||||||||||||||||||||  |||| ||||| |||||||    ||||| ||||||||  ||| |||| |  || |||     
T  34659390 gactggactactcttgtgttgtgggaggaaccagtataaaaactactttgtgtctgctttccttctctctgactctttaactttgtgttctaattatcca 34659291  T
Q  305 ctgcattcagactctgagtcagaatctgcaacatccgattctgactaggtattttataaacactaaagaaaaagaaacttttaaaatgacaacaaaattc 404  Q
    ||||||||||||||||||| |||||||||||||   ||||||||| |||| | |||| ||||| |||||||||||||| || | || | ||||| |||||    
T  34659290 ctgcattcagactctgagttagaatctgcaacaagagattctgaccaggt-tattattaacaccaaagaaaaagaaaccttcataaagccaacacaattc 34659192  T
Q  405 aa-tttcccttcttgtgttttt 425  Q
    || ||| |||||||||||||||    
T  34659191 aactttaccttcttgtgttttt 34659170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 102 - 253
Target Start/End: Original strand, 21689460 - 21689611
Alignment:
Q  102 atagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaa 201  Q
    |||||||| |||||||||| ||||||| ||| |  |||||||||||||  ||| |||| |||| |||||||    |||||||| ||||||||||||||||    
T  21689460 atagaagtctcttgtagttgtgcttgagcataggcaagtctcttggaaatgtctttgagcaatttgtaatcagttgtgattatagtgaaatcccttggaa 21689559  T
Q  202 gtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaaatt 253  Q
    ||| |||||| ||| |||||||||   ||||  |||||||||||||||||||    
T  21689560 gtggaaggggactggactactccttgattgtaagaggaaccagtataaaatt 21689611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 99 - 201
Target Start/End: Complemental strand, 19730996 - 19730894
Alignment:
Q  99 aacatagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttg 198  Q
    |||||| |||| ||||| |||| ||||||| ||| ||||||||||||||||| |||||| |||||| |||||||| | | |||||| |||||||||||||    
T  19730996 aacatataagtctcttgcagttgtgcttgagcatagagaagtctcttggaagtgtccttaatcaatttgtaatcctgtgagattatagtgaaatcccttg 19730897  T
Q  199 gaa 201  Q
    |||    
T  19730896 gaa 19730894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 10481603 - 10481539
Alignment:
Q  179 gattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaacca 243  Q
    |||||| |||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||    
T  10481603 gattatagtgaaatcccttggaaatgcaaggggactgaactactcctgtgttgtgggaggaacca 10481539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 19490368 - 19490305
Alignment:
Q  187 tgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaa 250  Q
    |||||| |||||||| ||  ||||| ||| ||||||||||||||||||||||||||||||||||    
T  19490368 tgaaattccttggaaatgctaggggactggactactcctatgttgtgggaggaaccagtataaa 19490305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 20395932 - 20395885
Alignment:
Q  299 tttccgctgcattcagactctgagtcagaatctgcaacatccgattct 346  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  20395932 tttccgctgctttcagactctgagtcagaatctgcaacatcagattct 20395885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 4312107 - 4311978
Alignment:
Q  120 tatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaact 219  Q
    |||||||| |||||  ||||||||||||| | |||||||| |||| |||||||||| | | |||| ||||||||||||||||||| || | | ||  | |    
T  4312107 tatgcttgtacatttggaagtctcttggaggtgtccttgagcaat-tgtaatccagtgaggttatagtgaaatcccttggaagtgcaatgagactagatt 4312009  T
Q  220 actcctatgttgtgggaggaaccagtataaa 250  Q
    |||||||  |||| |||||||||| ||||||    
T  4312008 actcctagtttgtaggaggaaccaatataaa 4311978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 20395613 - 20395566
Alignment:
Q  299 tttccgctgcattcagactctgagtcagaatctgcaacatccgattct 346  Q
    |||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  20395613 tttccgctgctttcagactctgagtcagaacctgcaacatcagattct 20395566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 20395259 - 20395206
Alignment:
Q  299 tttccgctgcattcagactctgagtcagaatctgcaacatccgattctgactag 352  Q
    |||||||||| |||||||||| |||| |||||| ||||||| ||||||||||||    
T  20395259 tttccgctgctttcagactctaagtccgaatctacaacatcagattctgactag 20395206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 101 - 250
Target Start/End: Complemental strand, 20396456 - 20396308
Alignment:
Q  101 catagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttgga 200  Q
    ||||||||| ||| | |||| | ||||| |||||||||||||||||  |  |||||||| |||  ||||||| ||| || ||||  | ||||||||||||    
T  20396456 catagaagtctctcgcagttgtacttgagcattgagaagtctcttgctat-gtccttgagcaaattgtaatcaagattggttatactaaaatcccttgga 20396358  T
Q  201 agtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaa 250  Q
    |||| |||||  ||| ||||||||  | |||| |||||||| ||||||||    
T  20396357 agtgcaagggtactggactactcccgttttgtaggaggaactagtataaa 20396308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 19122551 - 19122500
Alignment:
Q  224 ctatgttgtgggaggaaccagtataaaattactctgtgtgtgctttctctct 275  Q
    |||||||||||||||||| ||||||||| | || ||||| ||||||||||||    
T  19122551 ctatgttgtgggaggaactagtataaaagtgctttgtgtctgctttctctct 19122500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 20396250 - 20396203
Alignment:
Q  299 tttccgctgcattcagactctgagtcagaatctgcaacatccgattct 346  Q
    ||||| |||| |||||||| ||||||||||||||||||||| ||||||    
T  20396250 tttccactgctttcagactatgagtcagaatctgcaacatcagattct 20396203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 27167291 - 27167391
Alignment:
Q  101 catagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttgga 200  Q
    |||| |||| ||||| |||| | ||||| ||||||||||||||||||  | |||||| | |||  ||||||||| ||||||||| |||||||||||| ||    
T  27167291 catataagtctcttgcagttgttcttgagcattgagaagtctcttgg-tgtgtccttaagcaaattgtaatcca-agtgattatagtgaaatcccttaga 27167388  T
Q  201 agt 203  Q
    |||    
T  27167389 agt 27167391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 10815295 - 10815398
Alignment:
Q  122 tgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactac 221  Q
    ||||| ||||||  |||||||||||| |  |||||||| |||| ||||||| || |  ||||| |||||||||||||||| |  |||||| ||| |||||    
T  10815295 tgcttaaacatttggaagtctcttggcaatgtccttgagcaat-tgtaatctagtgatattatagtgaaatcccttggaattacaaggggactggactac 10815393  T
Q  222 tccta 226  Q
    |||||    
T  10815394 tccta 10815398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 20396141 - 20396093
Alignment:
Q  99 aacatagaagtttcttgtagttatgcttgaacattgagaagtctcttgg 147  Q
    ||||||||| | ||| | |||||||||||| ||||||||||||||||||    
T  20396141 aacatagaaatctctcgcagttatgcttgagcattgagaagtctcttgg 20396093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 13 - 435
Target Start/End: Complemental strand, 18565591 - 18565166
Alignment:
Q  13 gcaaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtttc 112  Q
    ||||||||||||| | ||||||||||||| | ||| |||||||||||||||||| ||||||||||  || ||||  ||||||||||| |||| |||| ||    
T  18565591 gcaaagggaagtcgcttggagttgtccttgagcaagaagtctttaggtagtgtcttagagcaggagatcataagcggttgtgcttaagcataaaagtctc 18565492  T
Q  113 ttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaaggggg 212  Q
    ||| |||| ||||||| ||  |||||||||||||| || |||||||| |||  ||||||||| ||||||||| ||||||||| |||||| || ||||||     
T  18565491 ttgcagttgtgcttgagcaaagagaagtctcttggtagtgtccttgagcaagttgtaatccatagtgattatagtgaaatccattggaaatgcaagggga 18565392  T
Q  213 ctgaactactcctatgttgtgggaggaaccagtataaaattactctgtgtgtgctttctctcta----actctttatttttctgttatgttttccgctgc 308  Q
    ||| ||||||| | ||||||||||||||| ||||||||||| || ||||| || |||||||||     ||||||||| ||  | ||||||| ||||||||    
T  18565391 ctggactactcttgtgttgtgggaggaactagtataaaattgctttgtgtctgttttctctctctcggactctttatcttggttttatgttatccgctgc 18565292  T
Q  309 attcagactctgagtcagaatctgcaacatccgattctgactaggtattttataaacactaaagaaaaagaaa-cttttaaaatgacaacaaaattcaat 407  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||| ||| || ||||||  ||||||||||| | |  |||| | ||||| |||||||     
T  18565291 attcaaactctgagtcagaatctgcaacatcagattctgactaggt-tttaatgaacact-tagaaaaagaaatcgtcaaaaaggccaacacaattcaac 18565194  T
Q  408 ttcccttcttgtgttttttccaccttca 435  Q
      ||||||||||||||||  ||||||||    
T  18565193 cccccttcttgtgtttttctcaccttca 18565166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 54 - 253
Target Start/End: Complemental strand, 21838493 - 21838294
Alignment:
Q  54 tttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagt 153  Q
    |||||||||||| |||||| |||||||||| |  ||||||||||||   | ||||| ||||| |||| ||||||| || ||||||||||||  ||||||     
T  21838493 tttaggtagtgtaatagagtaggaagtcttgatcagttgtgcttaaggcttgaagtctcttgcagttgtgcttgagcactgagaagtctctgagaagagc 21838394  T
Q  154 ccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaaatt 253  Q
    ||||||  ||| ||||||||||||||||| |||||||||| |||||||||| || ||| ||  ||||||||| | ||||||||||||||| | |||||||    
T  21838393 ccttgagaaatttgtaatccagagtgattctggtgaaatctcttggaagtggaaagggactagactactcctgtcttgtgggaggaaccattgtaaaatt 21838294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 23433463 - 23433703
Alignment:
Q  11 aagcaaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtt 110  Q
    ||||||| |||||| |  ||||||||||||| |  |  |||||||||||||||||| |||||||  |||||||||| || |||||||||  |||| |||     
T  23433463 aagcaaatggaagtttattggagttgtccttgagaaggaagtctttaggtagtgtcctagagcat-aagtcttaagcaggtgtgcttaagtataggagtc 23433561  T
Q  111 tcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaaggg 210  Q
    ||||| | || || || | ||  ||||||| |||||||||||||||||| || | |||||||  | || ||||| ||||||||||||||||||| |||||    
T  23433562 tcttgcaattgtggttaagcaaagagaagtttcttggaagagtccttgagcatt-tgtaatcatgtgttattatagtgaaatcccttggaagtgcaaggg 23433660  T
Q  211 ggctgaactactcctatgttgtgggaggaaccagtataaaatt 253  Q
      ||| ||||||||| ||||||||||||||||| |||||||||    
T  23433661 aactggactactcctgtgttgtgggaggaaccactataaaatt 23433703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 20267743 - 20267934
Alignment:
Q  12 agcaaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagttt 111  Q
    |||||| |||| |||| || |||||| ||| | ||  |||||||| ||||||||| |  |||||||| ||||| | ||||||  |||| ||||||| | |    
T  20267743 agcaaaaggaaatctcttgaagttgtacttgagcacgaagtcttttggtagtgtcctc-agcaggaactcttaggcagttgtatttaagcatagaaatct 20267841  T
Q  112 cttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtg 204  Q
    |||| ||||  |||||||||||||||||||||||||||| ||||||||  ||| |||||||  | |||| ||| |||||||||||||||||||    
T  20267842 cttgcagttgggcttgaacattgagaagtctcttggaagtgtccttgagtaatttgtaatcttgtgtgactatagtgaaatcccttggaagtg 20267934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 21054372 - 21054563
Alignment:
Q  12 agcaaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagttt 111  Q
    |||||| |||| |||| || |||||| ||| | ||  |||||||| ||||||||| |  |||||||| ||||| | ||||||  |||| ||||||| | |    
T  21054372 agcaaaaggaaatctcttgaagttgtacttgagcacgaagtcttttggtagtgtcctc-agcaggaactcttaggcagttgtatttaagcatagaaatct 21054470  T
Q  112 cttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtg 204  Q
    |||| ||||  |||||||||||||||||||||||||||| ||||||||  ||| |||||||  | |||| ||| |||||||||||||||||||    
T  21054471 cttgcagttgggcttgaacattgagaagtctcttggaagtgtccttgagtaatttgtaatcttgtgtgactatagtgaaatcccttggaagtg 21054563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 101 - 250
Target Start/End: Complemental strand, 5825403 - 5825255
Alignment:
Q  101 catagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttgga 200  Q
    ||||||||| ||||| |||| || |||| ||||||||| ||||||||   | ||||||| |||  ||||||| ||||||||||| |||||||||| || |    
T  5825403 catagaagtctcttgcagttgtgtttgagcattgagaattctcttggtgta-tccttgagcaagttgtaatcgagagtgattatagtgaaatcccctgaa 5825305  T
Q  201 agtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaa 250  Q
    ||||||||||| ||| ||||||| | |||||||| |||||||||| ||||    
T  5825304 agtgaaaggggactggactactcatgtgttgtggaaggaaccagtctaaa 5825255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 13644768 - 13644651
Alignment:
Q  136 gaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtggg 235  Q
    ||||||||||| ||||||||| || |||| ||||||   | |||||||| ||||||||||||| ||||| ||| || ||| ||||||||| |||||||||    
T  13644768 gaagtctcttgtaagagtcctagagcaatatgtaattatgtgtgattatagtgaaatcccttgaaagtgcaagcggactggactactcctgtgttgtggg 13644669  T
Q  236 aggaaccagtataaaatt 253  Q
    ||||||||||||| ||||    
T  13644668 aggaaccagtatacaatt 13644651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 13745193 - 13745076
Alignment:
Q  136 gaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtggg 235  Q
    ||||||||||| ||||||||| || |||| ||||||   | |||||||| ||||||||||||| ||||| ||| || ||| ||||||||| |||||||||    
T  13745193 gaagtctcttgtaagagtcctagagcaatatgtaattatgtgtgattatagtgaaatcccttgaaagtgcaagcggactggactactcctgtgttgtggg 13745094  T
Q  236 aggaaccagtataaaatt 253  Q
    ||||||||||||| ||||    
T  13745093 aggaaccagtatacaatt 13745076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 211406 - 211506
Alignment:
Q  102 atagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaa 201  Q
    |||||||| |||||||||| ||||||| ||| | ||||||||||||||| |||||||| |||| |||||||     ||||||| ||||||||||||||||    
T  211406 atagaagtatcttgtagttgtgcttgagcatagggaagtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaatcccttggaa 211505  T
Q  202 g 202  Q
    |    
T  211506 g 211506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 240850 - 240750
Alignment:
Q  102 atagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaa 201  Q
    |||||||| |||||||||| ||||||| ||| | ||||||||||||||| |||||||| |||| |||||||     ||||||| ||||||||||||||||    
T  240850 atagaagtatcttgtagttgtgcttgagcatagggaagtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaatcccttggaa 240751  T
Q  202 g 202  Q
    |    
T  240750 g 240750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 725029 - 725129
Alignment:
Q  102 atagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaa 201  Q
    |||||||| |||||||||| ||||||| ||| | ||||||||||||||| |||||||| |||| |||||||     ||||||| ||||||||||||||||    
T  725029 atagaagtatcttgtagttgtgcttgagcatagggaagtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaatcccttggaa 725128  T
Q  202 g 202  Q
    |    
T  725129 g 725129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 794205 - 794105
Alignment:
Q  102 atagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaa 201  Q
    |||||||| |||||||||| ||||||| ||| | ||||||||||||||| |||||||| |||| |||||||     ||||||| ||||||||||||||||    
T  794205 atagaagtatcttgtagttgtgcttgagcatagggaagtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaatcccttggaa 794106  T
Q  202 g 202  Q
    |    
T  794105 g 794105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 5825202 - 5825135
Alignment:
Q  299 tttccgctgcattcagactctgagtcagaatctgcaacatccgattctgactaggtattttataaacact 368  Q
    |||||| |||||||||||||||||||||||||||||||||| |||  |||| |||  |||||||||||||    
T  5825202 tttccgttgcattcagactctgagtcagaatctgcaacatcagatgttgaccagg--ttttataaacact 5825135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 23586710 - 23586815
Alignment:
Q  144 ttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaacca 243  Q
    ||||||| |||||||  |||| ||||||| || |||||||| ||||||  ||||||||||| |||||| ||||||||||| ||  |||| | ||||||||    
T  23586710 ttggaagtgtccttgggcaat-tgtaatctagtgtgattatagtgaaaatccttggaagtgcaaggggactgaactactcatagtttgtagaaggaacca 23586808  T
Q  244 gtataaa 250  Q
     ||||||    
T  23586809 atataaa 23586815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 24309176 - 24309251
Alignment:
Q  135 agaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggg 211  Q
    ||||||||||||   |||||||||| |||| ||||||| || | |||||| |||||||||||| |||||| ||||||    
T  24309176 agaagtctcttgtctgagtccttgagcaat-tgtaatctagtgagattatcgtgaaatccctttgaagtgcaagggg 24309251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 10878319 - 10878686
Alignment:
Q  19 ggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtttcttgtag 118  Q
    |||||| || ||||||||||||| | ||  |||||||||||||||| | || |||||||||||||||| |||||||||||| || | |||| ||||||||    
T  10878319 ggaagtatcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagcagttgtgcttaatcaaa-aagtatcttgtag 10878417  T
Q  119 ttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaac 218  Q
    || | ||||| ||||||||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||||| |||||||||| || ||| ||||||    
T  10878418 ttgttcttgagcattgagaagtcttttggaagagtccttgaacaatttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaac 10878516  T
Q  219 tactcctatgttgtgggaggaaccagtataaaattactctgtgtgtgctt----tctctctaactctttatttttctgttatgttttccgc----tgcat 310  Q
    ||||| | |||| |||||||||  ||||||||||| || ||||| |||||    ||||||| ||||||||| |||  |||  ||||||  |    |||||    
T  10878517 tactcatgtgttatgggaggaaagagtataaaatttctttgtgtatgctttctctctctctgactctttatctttgagttccgttttctactgcatgcat 10878616  T
Q  311 tcagactctgagtcagaatctgcaacatccgattctgactaggtattttataaacactaaagaaaaagaaac 382  Q
    |||||||| ||||||||||||  |||||| ||||||||| |||| |||||||||||||  ||||||||||||    
T  10878617 tcagactccgagtcagaatctataacatcagattctgaccaggt-ttttataaacact-cagaaaaagaaac 10878686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 131 - 253
Target Start/End: Original strand, 16201799 - 16201919
Alignment:
Q  131 attgagaagtctcttggaagagtccttgatcaatctgtaatcca-gagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgt 229  Q
    ||||||||||||||||||||||||||||| || ||||||||  | || |  |||| ||||||||||||||||||| |||||| ||| | ||||||| |||    
T  16201799 attgagaagtctcttggaagagtccttgaaca-tctgtaatttatgaat--ttatagtgaaatcccttggaagtgcaaggggactggattactcctgtgt 16201895  T
Q  230 tgtgggaggaaccagtataaaatt 253  Q
    ||| ||| ||||||||||||||||    
T  16201896 tgtaggatgaaccagtataaaatt 16201919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 253
Target Start/End: Original strand, 8711821 - 8711972
Alignment:
Q  102 atagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaa 201  Q
    |||||||| ||||  |||| ||||||| ||| | |||||||||| |||| |||||||| |||| |||||||    ||||||||  | |||||||||||||    
T  8711821 atagaagtctcttaaagttgtgcttgagcatagggaagtctcttagaagtgtccttgagcaatttgtaatcatatgtgattataattaaatcccttggaa 8711920  T
Q  202 gtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaaatt 253  Q
    | | |||||| ||| |||||||||   |||| ||||||||| ||||||||||    
T  8711921 gcgcaaggggactggactactcctgcattgtaggaggaaccggtataaaatt 8711972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 253
Target Start/End: Original strand, 9063708 - 9063859
Alignment:
Q  102 atagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaa 201  Q
    |||||||| ||||  |||| ||||||| ||| | |||||||||| |||| |||||||| |||| |||||||    ||||||||  | |||||||||||||    
T  9063708 atagaagtctcttaaagttgtgcttgagcatagggaagtctcttagaagtgtccttgagcaatttgtaatcatatgtgattataattaaatcccttggaa 9063807  T
Q  202 gtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaaatt 253  Q
    | | |||||| ||| |||||||||   |||| ||||||||| ||||||||||    
T  9063808 gcgcaaggggactggactactcctgcattgtaggaggaaccggtataaaatt 9063859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 121 - 253
Target Start/End: Complemental strand, 10917780 - 10917651
Alignment:
Q  121 atgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaacta 220  Q
    |||||||| ||||||||||| |||||||||||||||| | | || ||||||   | | ||||||  |||||||||||||||| | |||||  ||| ||||    
T  10917780 atgcttgagcattgagaagtttcttggaagagtccttaagccat-tgtaatat-gtgagattataatgaaatcccttggaagagcaaggga-ctggacta 10917684  T
Q  221 ctcctatgttgtgggaggaaccagtataaaatt 253  Q
    ||||| ||||||||||||||| |||||||||||    
T  10917683 ctcctgtgttgtgggaggaactagtataaaatt 10917651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 275
Target Start/End: Original strand, 21528691 - 21528773
Alignment:
Q  195 cttggaagtgaaagggggctgaactactcctat--gttgtgggaggaaccagtataaaattactctgtgtgtgctttctctct 275  Q
    |||||||||| |||||| ||| |||||| ||||  ||||| |||||||||||||||||||| || ||||| ||||||||||||    
T  21528691 cttggaagtgcaaggggactggactactactatatgttgtaggaggaaccagtataaaattgctttgtgtctgctttctctct 21528773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 11073937 - 11073825
Alignment:
Q  137 aagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtggga 236  Q
    ||||||||||||||| ||||| | |||| ||||||  || | |||||| |||||||| ||| |||||| |||||| ||| |||||||||  ||||| |||    
T  11073937 aagtctcttggaagattccttaagcaat-tgtaatatagtgagattatagtgaaatctcttagaagtgcaaggggactggactactcctgcgttgttgga 11073839  T
Q  237 ggaaccagtataaa 250  Q
    ||||||| ||||||    
T  11073838 ggaaccaatataaa 11073825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 281
Target Start/End: Complemental strand, 10923007 - 10922845
Alignment:
Q  122 tgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactac 221  Q
    ||||||| ||||||||||| |||||||||||| ||||| |||| |||||| | | | ||||||  |||||||||||| ||||| || | | ||| |||||    
T  10923007 tgcttgagcattgagaagtttcttggaagagtacttgagcaat-tgtaat-ctgtgagattataatgaaatcccttgaaagtgcaa-gagactggactac 10922911  T
Q  222 tcctatgt-----tgtgggaggaaccagtataaaattac-tctgtgtgtgctttctctctaactct 281  Q
    ||||||||     |||||||||||| ||||||||||| | ||||| ||  ||||||||||| ||||    
T  10922910 tcctatgttgtggtgtgggaggaactagtataaaattgcatctgtctgctctttctctctatctct 10922845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 27486601 - 27486662
Alignment:
Q  189 aaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaa 250  Q
    ||||| |||||||||| |||||| ||| ||||||||| | ||||||||||||||| ||||||    
T  27486601 aaatctcttggaagtgcaaggggactggactactcctttattgtgggaggaaccaatataaa 27486662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 13178470 - 13178594
Alignment:
Q  101 catagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttgga 200  Q
    |||| |||| ||||| |||| |||||||  |  |||||||||||||| || |||||| | | |  ||||||||| |||| |||| |||||||| |||| |    
T  13178470 catataagtctcttgcagttgtgcttgagaaaagagaagtctcttggtagtgtccttaagctaattgtaatccatagtggttattgtgaaatctcttgca 13178569  T
Q  201 agtgaaagggggctgaactactcct 225  Q
    |||| |||||| ||| |||||||||    
T  13178570 agtgcaaggggactggactactcct 13178594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 15332024 - 15332072
Alignment:
Q  227 tgttgtgggaggaaccagtataaaattactctgtgtgtgctttctctct 275  Q
    ||||||||||||||||||||||||||| || | ||| ||||||||||||    
T  15332024 tgttgtgggaggaaccagtataaaattgctttttgtctgctttctctct 15332072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 20736632 - 20736704
Alignment:
Q  181 ttatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaaatt 253  Q
    |||| ||||||||||||| ||||| |||||| ||| ||||||| | |||| |||||||| ||| |||||||||    
T  20736632 ttatagtgaaatcccttgaaagtgcaaggggactggactactcatgtgttatgggaggagccaatataaaatt 20736704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 253
Target Start/End: Original strand, 20747259 - 20747387
Alignment:
Q  122 tgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactac 221  Q
    ||||||| |||||||||||||||| ||||||||||||| | || ||||||    |  | |||| ||||||||||||| ||||| |||||| ||| |||||    
T  20747259 tgcttgagcattgagaagtctcttagaagagtccttgagc-atttgtaatgttta--ggttatagtgaaatcccttgaaagtgcaaggggactggactac 20747355  T
Q  222 tcctatgttgtgggaggaaccagtataaaatt 253  Q
    |  | |||| |||||||||||| || ||||||    
T  20747356 ttttgtgttatgggaggaaccaataaaaaatt 20747387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 14427633 - 14427759
Alignment:
Q  122 tgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactac 221  Q
    ||||||| ||||  ||||||||||||||| |||||||| |||| ||||||   |  ||||| | |||||||||||||||||   |||||| ||| |||||    
T  14427633 tgcttgagcatttcgaagtctcttggaagtgtccttgagcaat-tgtaatattgtatgattctagtgaaatcccttggaagctcaaggggactggactac 14427731  T
Q  222 tcctatgttgtgggaggaaccagtataa 249  Q
    || |   |||| ||||||||||||||||    
T  14427732 tcatggtttgtaggaggaaccagtataa 14427759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 5628601 - 5628674
Alignment:
Q  177 gtgattatggtgaaatc-ccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataa 249  Q
    |||||||| |||||||| ||||||||||| |||||| ||| |||||| |  |||||||| ||||||||| ||||    
T  5628601 gtgattatagtgaaatctccttggaagtgcaaggggactggactacttccgtgttgtggaaggaaccaggataa 5628674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 9323184 - 9323147
Alignment:
Q  11 aagcaaagggaagtctcatggagttgtccttaaacaat 48  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  9323184 aagcaaagggaagtctcttggagttgtccttaagcaat 9323147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 4768210 - 4768281
Alignment:
Q  137 aagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagg 209  Q
    |||||||||| |||||||||||| | || ||||||| || | |||||| |||||||| |||||||||| ||||    
T  4768210 aagtctcttgaaagagtccttgagc-atttgtaatctagtgagattatagtgaaatctcttggaagtgcaagg 4768281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 9e-47; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 22748031 - 22747793
Alignment:
Q  11 aagcaaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtt 110  Q
    |||||||| ||||||||   ||||| ||||| | ||| |||||||||||||| ||| | ||| ||||||||||||| ||||||||||||   |||||||     
T  22748031 aagcaaagagaagtctctgagagttatccttgagcaagaagtctttaggtagagtcctggaggaggaagtcttaagcagttgtgcttaagt-tagaagtc 22747933  T
Q  111 tcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaaggg 210  Q
    ||||| |||| ||||||| ||||||||||||||||||||||||||||||  ||| ||||||||   || ||||| ||||||||||||||||||| |||||    
T  22747932 tcttgcagttgtgcttgagcattgagaagtctcttggaagagtccttgagaaatttgtaatcctatgttattatagtgaaatcccttggaagtgcaaggg 22747833  T
Q  211 ggctgaactactcctatgttgtgggaggaaccagtataaa 250  Q
    | ||| ||||||| | |||| |||||||||||| ||||||    
T  22747832 gactggactactcttgtgttatgggaggaaccaatataaa 22747793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 136 - 275
Target Start/End: Complemental strand, 9823776 - 9823637
Alignment:
Q  136 gaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtggg 235  Q
    ||||||||||||||| |||||||| |||| |||||||  | ||||| || ||||||||||||| ||||| ||||||| || |||||| || |||||||||    
T  9823776 gaagtctcttggaagtgtccttgagcaatttgtaatcatgtgtgatgatagtgaaatcccttgaaagtgcaagggggttggactacttctgtgttgtggg 9823677  T
Q  236 aggaaccagtataaaattactctgtgtgtgctttctctct 275  Q
    ||||| ||||||||||||  | | ||| ||||||||||||    
T  9823676 aggaatcagtataaaattgttttatgtctgctttctctct 9823637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 137 - 281
Target Start/End: Original strand, 19570247 - 19570391
Alignment:
Q  137 aagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtggga 236  Q
    ||||||||||||||  ||||||| |||| ||||||  ||||||||||| ||||||||| ||| ||||| || | | ||| ||||||||| ||||||||||    
T  19570247 aagtctcttggaagtctccttgagcaatttgtaatttagagtgattatagtgaaatccattgaaagtgcaatgagactggactactcctctgttgtggga 19570346  T
Q  237 ggaaccagtataaaattactctgtgtgtgctttctctctaactct 281  Q
    ||||| | ||||||||| || |||   ||||||||||||| ||||    
T  19570347 ggaacaaatataaaattcctttgttcctgctttctctctatctct 19570391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 24495137 - 24495249
Alignment:
Q  136 gaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtggg 235  Q
    |||||||||||||||||||| ||| |||| ||||||| || | ||||||  |||||||||||| ||||| |||||| ||| ||||||| | |||||||||    
T  24495137 gaagtctcttggaagagtccctgagcaat-tgtaatc-agtgagattataatgaaatcccttgaaagtgcaaggggactggactactcttgtgttgtggg 24495234  T
Q  236 aggaaccagtataaa 250  Q
    |||||||||||||||    
T  24495235 aggaaccagtataaa 24495249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 174 - 339
Target Start/End: Complemental strand, 18303828 - 18303659
Alignment:
Q  174 agagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaaattactctgtgtgtgctttctct 273  Q
    ||||||||||| |||||||||||| |||||  |||||| ||   |||||| | |||| |||||||||||| |||||| || || | ||| ||  ||||||    
T  18303828 agagtgattatagtgaaatcccttagaagtataaggggactcggctactcatgtgttatgggaggaaccaatataaa-ttgctttatgtatgtcttctct 18303730  T
Q  274 cta----actctttatttttctgttatgt-tttccgctgcattcagactctgagtcagaatctgcaacatc 339  Q
    |||    ||||||||| ||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  18303729 ctatcttactctttatctttgtgttatgtatttccgttgcattcagactctgagtcggaatctgcaacatc 18303659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 275
Target Start/End: Original strand, 22797709 - 22797850
Alignment:
Q  134 gagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtg 233  Q
    ||||||||||||||||  ||||||||  ||| |||||||    |||| ||| ||||||||||||| ||||| |||||| ||| ||||||||||  |||      
T  22797709 gagaagtctcttggaattgtccttgagaaatttgtaatcagttgtgactatagtgaaatcccttgtaagtgcaaggggactggactactcctagattgca 22797808  T
Q  234 ggaggaaccagtataaaattactctgtgtgtgctttctctct 275  Q
    |||| |||||| ||||||||  | ||||| | ||||||||||    
T  22797809 ggagaaaccaggataaaattgttgtgtgtcttctttctctct 22797850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 338
Target Start/End: Original strand, 24885848 - 24886075
Alignment:
Q  122 tgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactac 221  Q
    ||||||| ||||||||||||||||||  | |||||| | |||  ||||||| ||||||||||| ||||||||||||||||||| || |||  |  | |||    
T  24885848 tgcttgagcattgagaagtctcttggt-gtgtccttaagcaaattgtaatc-agagtgattatagtgaaatcccttggaagtgcaaagggattagaatac 24885945  T
Q  222 tcctatgttgtgggaggaaccagtataaaattactctgtgtgtg------ctttctctctaactctttatttttc-------tgttatgt-tttccgctg 307  Q
    | || |||||| |||| ||||| |||||| || || ||||| ||      |||||||||| ||||||||| |||        |||| ||| |||||||||    
T  24885946 ttctgtgttgtaggagaaaccattataaa-ttgctttgtgtctgtcttctctttctctctgactctttatattttatttgtgtgttctgtatttccgctg 24886044  T
Q  308 cattcagactctgagtcagaatctgcaacat 338  Q
    ||||||||||| |||||||||||||||||||    
T  24886045 cattcagactccgagtcagaatctgcaacat 24886075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 346
Target Start/End: Original strand, 12063278 - 12063464
Alignment:
Q  166 tgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaaattactctgtgtgtg 265  Q
    ||||||| ||||||||||| ||||||||||||| ||||| ||| || ||| | ||||||| |||||||| || |||| | || |||||  | ||||| ||    
T  12063278 tgtaatctagagtgattatagtgaaatcccttgaaagtgcaagaggactggagtactcctgtgttgtggcagaaaccggaat-aaattggtttgtgtttg 12063376  T
Q  266 ------ctttctctctaactctttatttttctgttatg-ttttccgctgcattcagactctgagtcagaatctgcaacatccgattct 346  Q
          || ||||||| ||| ||||||||| |||||||  || || ||||||||||||||||| ||||||||  ||||||| ||||||    
T  12063377 ttttttctctctctctgactttttatttttgtgttatgcattcccactgcattcagactctgaatcagaatccacaacatcagattct 12063464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 24515482 - 24515586
Alignment:
Q  144 ttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaacca 243  Q
    |||||||||||||||| |||| ||||||  ||   |||||| ||||| |||||||||||||  ||||  ||| ||||||||| |||||||||||||||||    
T  24515482 ttggaagagtccttgagcaat-tgtaatttagtaagattatagtgaactcccttggaagtgctaggga-ctggactactcctgtgttgtgggaggaacca 24515579  T
Q  244 gtataaa 250  Q
     ||||||    
T  24515580 atataaa 24515586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 247
Target Start/End: Complemental strand, 28759970 - 28759849
Alignment:
Q  125 ttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcc 224  Q
    |||| ||||||||||||||||||  | |||||| | |||  ||||||| ||| ||||||| ||||||| ||||||||||  |||||  ||   ||||| |    
T  28759970 ttgagcattgagaagtctcttggt-gtgtccttaagcaaattgtaatcaagattgattatagtgaaattccttggaagtacaagggaactagcctacttc 28759872  T
Q  225 tatgttgtgggaggaaccagtat 247  Q
    |||||||| ||||||||||||||    
T  28759871 tatgttgtaggaggaaccagtat 28759849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 224
Target Start/End: Complemental strand, 24163201 - 24163079
Alignment:
Q  101 catagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttgga 200  Q
    ||||||||| ||||| |||| | ||||| ||||||||||||| |||| |  |||||||| |||   ||| || ||| || |||| ||||||||| |||||    
T  24163201 catagaagtctcttgcagttgtacttgagcattgagaagtctattggta-tgtccttgagcaaatcgtactcaagattggttatagtgaaatccattgga 24163103  T
Q  201 agtgaaagggggctgaactactcc 224  Q
    |||| |||||| ||| ||||||||    
T  24163102 agtgcaaggggactggactactcc 24163079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 17607761 - 17607835
Alignment:
Q  177 gtgattatggtgaaatc-ccttggaagtgaaaggggg-ctgaactactcctatgttgtgggaggaaccagtataa 249  Q
    |||||||| |||||||| ||||||||||| ||||||| ||| |||||| |  |||||||| ||||||||||||||    
T  17607761 gtgattatagtgaaatctccttggaagtgcaagggggactggactacttccgtgttgtggaaggaaccagtataa 17607835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 17618376 - 17618450
Alignment:
Q  177 gtgattatggtgaaatc-ccttggaagtgaaaggggg-ctgaactactcctatgttgtgggaggaaccagtataa 249  Q
    |||||||| |||||||| ||||||||||| ||||||| ||| |||||| |  |||||||| ||||||||||||||    
T  17618376 gtgattatagtgaaatctccttggaagtgcaagggggactggactacttccgtgttgtggaaggaaccagtataa 17618450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 9823601 - 9823552
Alignment:
Q  306 tgcattcagactctgagtcagaatctgca-acatccgattctgactaggt 354  Q
    |||||||||||||||||||||||| |||| || || ||||||||||||||    
T  9823601 tgcattcagactctgagtcagaatatgcatacctcagattctgactaggt 9823552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 12046577 - 12046548
Alignment:
Q  305 ctgcattcagactctgagtcagaatctgca 334  Q
    ||||||||||||||||||||||||||||||    
T  12046577 ctgcattcagactctgagtcagaatctgca 12046548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 19570152 - 19570233
Alignment:
Q  13 gcaaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtg 94  Q
    |||||||||||| || ||||||||||||  |  || |||||||||||| ||||| || |||| |||||||| || |||||||    
T  19570152 gcaaagggaagtttcttggagttgtcctcgagtaagaagtctttaggtggtgtcctaaagcaagaagtcttgagcagttgtg 19570233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 12046765 - 12046685
Alignment:
Q  104 agaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattat 184  Q
    |||||| | ||| |||| |||||||  |||||||||||||||| || ||||||||| ||||  | |||| |||||||||||    
T  12046765 agaagtcttttgcagttgtgcttgagtattgagaagtctcttgaaaaagtccttgaacaattagcaatctagagtgattat 12046685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 4e-46; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 109 - 275
Target Start/End: Original strand, 19143407 - 19143573
Alignment:
Q  109 tttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaag 208  Q
    ||||||| |||| ||||||| ||||||||| ||||||||||||||||||||  ||| ||||||| ||||||||||| ||||||||||||||||||| |||    
T  19143407 tttcttgcagttgtgcttgagcattgagaattctcttggaagagtccttgagaaatttgtaatctagagtgattatagtgaaatcccttggaagtgcaag 19143506  T
Q  209 ggggctgaactactcctatgttgtgggaggaaccagtataaaattactctgtgtgtgctttctctct 275  Q
    ||  ||||||||||| | |||||||||||||||| |||||||||| |||||||| | ||||||||||    
T  19143507 ggaactgaactactcttgtgttgtgggaggaacctgtataaaattgctctgtgtcttctttctctct 19143573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 109 - 275
Target Start/End: Original strand, 20742806 - 20742972
Alignment:
Q  109 tttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaag 208  Q
    ||||||| |||| ||||||| ||||||||| ||||||||||||||||||||  ||| ||||||| ||||||||||| ||||||||||||||||||| |||    
T  20742806 tttcttgcagttgtgcttgagcattgagaattctcttggaagagtccttgagaaatttgtaatctagagtgattatagtgaaatcccttggaagtgcaag 20742905  T
Q  209 ggggctgaactactcctatgttgtgggaggaaccagtataaaattactctgtgtgtgctttctctct 275  Q
    ||  ||||||||||| | |||||||||||||||| |||||||||| |||||||| | ||||||||||    
T  20742906 ggaactgaactactcttgtgttgtgggaggaacctgtataaaattgctctgtgtcttctttctctct 20742972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 22974716 - 22974587
Alignment:
Q  120 tatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaact 219  Q
    ||||||||| ||||||||||||||||||| |||||||||| |||| ||||||| ||   ||||||  | |||||||||||||||| ||||||  ||||||    
T  22974716 tatgcttgagcattgagaagtctcttggacgagtccttgagcaat-tgtaatctagttagattatactaaaatcccttggaagtgcaaggggagtgaact 22974618  T
Q  220 actcctatgttgtgggaggaaccagtataaa 250  Q
    ||||||||| |||||||||||||| ||||||    
T  22974617 actcctatgctgtgggaggaaccaatataaa 22974587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 19414173 - 19414082
Alignment:
Q  120 tatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggg 211  Q
    |||| |||| |||||||||||||||||| || ||||||||  ||  ||||||| ||| ||||||| ||||||||||||||||||| ||||||    
T  19414173 tatggttgagcattgagaagtctcttgggagtgtccttgagaaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaagggg 19414082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 2277854 - 2277601
Alignment:
Q  21 aagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtttcttgtagtt 120  Q
    ||||||| ||||||| ||||| | || ||||||||||  ||| ||| |||| ||||||| |||||| |||||||||||| ||||||||| ||| | ||      
T  2277854 aagtctcttggagttttccttgagca-taagtctttaaatagagtcctagatcaggaaggcttaagcagttgtgcttaagcatagaagtctctagcagca 2277756  T
Q  121 atgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaacta 220  Q
     |  |||| ||  |||||| |||||| ||| ||||||||  ||| | |||||  | |||||||| |||||||||  || || || |||||| ||| | ||    
T  2277755 ttaattgagcaaagagaagactcttgaaagtgtccttgagtaatttataatcatgtgtgattatagtgaaatcctatgaaattgcaaggggactggatta 2277656  T
Q  221 ctcctatgttgtgggaggaaccagtataaaattactctgtgtgtgctttctctct 275  Q
    || ||   |||| |||||||||||||||||||  || ||||| |||| |||||||    
T  2277655 cttctggattgtaggaggaaccagtataaaatatctttgtgtctgctctctctct 2277601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 20052668 - 20052633
Alignment:
Q  312 cagactctgagtcagaatctgcaacatccgattctg 347  Q
    |||||||||||||||||||||||||||| |||||||    
T  20052668 cagactctgagtcagaatctgcaacatcagattctg 20052633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 1782573 - 1782500
Alignment:
Q  177 gtgattatggtgaa-atcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataa 249  Q
    |||||||| ||||| ||| |||||||||| || ||| ||||| ||||||||  |||| ||||||||||||||||    
T  1782573 gtgattatagtgaatatctcttggaagtgcaatgggactgaattactcctaaattgtcggaggaaccagtataa 1782500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 10984185 - 10984233
Alignment:
Q  299 tttccgctgcattcagactctgagtcagaatctgcaacatccgattctg 347  Q
    |||||| ||||||||||||  |||| ||||||||||||||| |||||||    
T  10984185 tttccgttgcattcagacttagagtaagaatctgcaacatcagattctg 10984233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 4e-46; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 12439759 - 12439992
Alignment:
Q  19 ggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtttcttgtag 118  Q
    ||||||||| ||||||||| ||| | || ||| | ||||||||||||| ||||| |||||||||||||||| ||||||||| ||| ||||| ||||| ||    
T  12439759 ggaagtctcttggagttgttcttgagca-taaatatttaggtagtgtcttagagaaggaagtcttaagtaggtgtgcttaagcattgaagtctcttgcag 12439857  T
Q  119 ttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaac 218  Q
    || ||||||| ||||||||||||||||| ||| || ||||| || | ||||||||| ||||||||| ||||||||||||||||||| ||| ||  || |     
T  12439858 ttgtgcttgagcattgagaagtctcttgaaagtgtgcttgagcattttgtaatccatagtgattatagtgaaatcccttggaagtgcaagaggattggag 12439957  T
Q  219 tactcctatgttgtgggaggaaccagtataaaatt 253  Q
    |||||||   ||||||||||||| |||||||||||    
T  12439958 tactcctgaattgtgggaggaactagtataaaatt 12439992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 19019801 - 19019914
Alignment:
Q  136 gaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtggg 235  Q
    |||||||||||||||||||||||| ||||  |||||| || | |||||| ||||||| ||||  ||||| |||||| ||| ||||||| | | |||||||    
T  19019801 gaagtctcttggaagagtccttgagcaatg-gtaatctagtgagattatagtgaaattccttaaaagtgcaaggggactggactactcatgtattgtggg 19019899  T
Q  236 aggaaccagtataaa 250  Q
    |||||||||||||||    
T  19019900 aggaaccagtataaa 19019914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 39476610 - 39476562
Alignment:
Q  298 ttttccgctgcattcagactctgagtcagaatctgcaacatccgattct 346  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39476610 ttttccgctgcattcagactctgagtcagaatctgcaacatcagattct 39476562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 24285953 - 24286075
Alignment:
Q  135 agaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgt-- 232  Q
    |||||| ||||| ||| || ||||| |||| | ||||||||||||||||  || |||||| ||||||||| |||||| ||| ||||||||  ||||||      
T  24285953 agaagtatcttgcaagggttcttgagcaatttttaatccagagtgattacagtaaaatcctttggaagtgtaaggggactggactactccattgttgtgg 24286052  T
Q  233 --gggaggaaccagtataaaatt 253  Q
      |||||||||||||||||||||    
T  24286053 gagggaggaaccagtataaaatt 24286075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 12669814 - 12669884
Alignment:
Q  180 attatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaa 250  Q
    ||||| ||||||| ||||||||||| |||||| ||| ||||||  | ||||||||||||||||||||||||    
T  12669814 attatagtgaaattccttggaagtgcaaggggactggactactattgtgttgtgggaggaaccagtataaa 12669884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 166 - 349
Target Start/End: Original strand, 9757155 - 9757347
Alignment:
Q  166 tgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaaattactctgtgtgtg 265  Q
    ||||||| ||||||||||  |||||| |  ||||||||  |||||| ||| ||||||| | ||||||||||||||||||| | ||||| || ||| | ||    
T  9757155 tgtaatcaagagtgattaaagtgaaagctattggaagttcaaggggactggactactcatgtgttgtgggaggaaccagtgt-aaattgctttgtctatg 9757253  T
Q  266 -ctt-tctctctaactctt-------tatttttctgttatgt-tttccgctgcattcagactctgagtcagaatctgcaacatccgattctgac 349  Q
     ||| ||||||| ||||||       ||| ||| |||||||| ||| || || |||||||||||||||||||||||| |||||| |||||||||    
T  9757254 tcttctctctctgactctttatcttctatctttgtgttatgtattttcgttgtattcagactctgagtcagaatctgtaacatcagattctgac 9757347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 19475016 - 19475061
Alignment:
Q  299 tttccgctgcattcagactctgagtcagaatctgcaacatccgatt 344  Q
    ||||||||||||||||||||||||||||||| || |||||| ||||    
T  19475016 tttccgctgcattcagactctgagtcagaatatgaaacatcagatt 19475061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 24006823 - 24006871
Alignment:
Q  49 aagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgctt 97  Q
    |||||||||||| ||||| ||||||||| |||||| || ||||||||||    
T  24006823 aagtctttaggttgtgtcctagagcagggagtcttgagcagttgtgctt 24006871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 22317193 - 22317453
Alignment:
Q  13 gcaaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtttc 112  Q
    ||||||||||||||| ||||||||||||| | ||  ||| |||| | ||||||| ||||||||||| ||||||| |||||||||||| ||||||||| ||    
T  22317193 gcaaagggaagtctcttggagttgtccttgagcag-aagactttggatagtgtcctagagcaggaattcttaagaagttgtgcttaagcatagaagtctc 22317291  T
Q  113 ttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaaggggg 212  Q
    ||  |  | | ||||| ||  ||||||| || |||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||||||| || | |     
T  22317292 ttacaactgtacttgagcaaagagaagtgtcctggaagtgtccttgagcaatttgtaatccagagtgattatagtgaaatcccttggaagtgcaatgaga 22317391  T
Q  213 ctgaactactcctatgttgtgggaggaaccagtataaaattactctgtgtgtgctttctctc 274  Q
    ||| |||||||||   |||| ||||||||||||||||||||  | ||||| | |||||||||    
T  22317392 ctggactactcctggattgtaggaggaaccagtataaaattgttttgtgtctactttctctc 22317453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 122 - 253
Target Start/End: Original strand, 22223400 - 22223529
Alignment:
Q  122 tgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactac 221  Q
    ||||||| ||||| |||||||| ||||||||||||| | |||| ||||||   | | |||||| ||||||||||||||||||| ||| || ||  |||||    
T  22223400 tgcttgagcattgggaagtctcgtggaagagtccttcagcaat-tgtaatat-gtgagattatagtgaaatcccttggaagtgcaagaggacttgactac 22223497  T
Q  222 tcctatgttgtgggaggaaccagtataaaatt 253  Q
    |||| |||||||||||||||||||||||||||    
T  22223498 tcctgtgttgtgggaggaaccagtataaaatt 22223529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 250
Target Start/End: Complemental strand, 8911134 - 8911036
Alignment:
Q  151 agtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaa 250  Q
    |||||| || |||| |||||||  | |||||||| |||||||||||| |||||| |||||| ||| | ||||||| ||||||||||||||||||||||||    
T  8911134 agtcctagagcaatttgtaatcttgtgtgattatagtgaaatcccttagaagtgtaagggg-ctggattactcctgtgttgtgggaggaaccagtataaa 8911036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 201
Target Start/End: Original strand, 18777238 - 18777339
Alignment:
Q  99 aacatagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttg 198  Q
    ||||||||||| ||||| |||| || |||| ||||||||| ||||||||  | |||||||| |||  |||||| || ||||||||| |||||||||||||    
T  18777238 aacatagaagtctcttgcagttgtgtttgagcattgagaaatctcttggt-gtgtccttgagcaagttgtaattcaaagtgattatagtgaaatcccttg 18777336  T
Q  199 gaa 201  Q
    |||    
T  18777337 gaa 18777339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 21588979 - 21589098
Alignment:
Q  122 tgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactac 221  Q
    ||||||| ||||||||||||||||| ||||||| ||||| ||| ||||||   | | |||||| ||||||||| ||||||||| || | | ||| |||||    
T  21588979 tgcttgagcattgagaagtctcttgaaagagtcattgataaat-tgtaatat-gtgagattatagtgaaatcctttggaagtgcaaagagactggactac 21589076  T
Q  222 tcctatgttgtgggaggaacca 243  Q
    |||| |||| ||||||||||||    
T  21589077 tcctgtgttttgggaggaacca 21589098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 39981163 - 39981287
Alignment:
Q  101 catagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttgga 200  Q
    |||| |||| ||||| |||| ||||||| ||  ||||||||||||| ||  |||||||| || | ||||||||    ||||||| ||||||| |||||||    
T  39981163 cataaaagtgtcttgcagttgtgcttgagcaaagagaagtctcttgaaaatgtccttgagcattttgtaatcctttatgattatagtgaaattccttgga 39981262  T
Q  201 agtgaaagggggctgaactactcct 225  Q
    |||| ||| || ||| |||||||||    
T  39981263 agtgcaagtggactggactactcct 39981287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 19052807 - 19052737
Alignment:
Q  152 gtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactc 223  Q
    |||||||| |||| |||||||  | |||||||| ||||||||||||||||||| |||||| ||| |||||||    
T  19052807 gtccttgagcaat-tgtaatcttgtgtgattatagtgaaatcccttggaagtgcaaggggactggactactc 19052737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 5718871 - 5718917
Alignment:
Q  177 gtgattatggtgaaatcccttggaagtgaaagggggctgaactactc 223  Q
    |||||||| |||||||  ||||||||||||||||| |||||||||||    
T  5718871 gtgattatagtgaaatttcttggaagtgaaaggggactgaactactc 5718917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 8685226 - 8684985
Alignment:
Q  11 aagcaaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtt 110  Q
    ||||||||||||||||  ||||||||||||| | ||  |||||||||||||||||  |||||||  || ||||||| || |||||||||  |||| |||     
T  8685226 aagcaaagggaagtctattggagttgtcctttagcaggaagtctttaggtagtgttctagagcataaa-tcttaagcaggtgtgcttaagtataggagtc 8685128  T
Q  111 tcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaaggg 210  Q
    ||||| | || || |||| ||  ||||||| |||||||||||| ||||| || | | |||||  | |||||||| ||||||||||||||||||| |||||    
T  8685127 tcttgcaattgtggttgagcaaagagaagtttcttggaagagtgcttgagcattttataatcatgtgtgattatagtgaaatcccttggaagtgcaaggg 8685028  T
Q  211 ggctgaactactcctatgttgtgggaggaaccagtataaaatt 253  Q
    | ||| ||||||||| ||||||||||||||||| |||||||||    
T  8685027 gactggactactcctgtgttgtgggaggaaccactataaaatt 8684985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 16152809 - 16153046
Alignment:
Q  13 gcaaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtttc 112  Q
    ||||||| ||||||| ||||||| |||||    || |||||||||||||||||| |||||||| |||| ||||| || ||||||||| ||||||||  ||    
T  16152809 gcaaaggaaagtctcttggagttttccttggcaaagaagtctttaggtagtgtcctagagcag-aagttttaagcaggtgtgcttaagcatagaagcctc 16152907  T
Q  113 ttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaaggggg 212  Q
    ||| |||| ||||||| ||  ||||||| |  | |||| |||||||| |||| |||||| |||||||||||| ||| |||||||| |||||||||||||     
T  16152908 ttgcagttgtgcttgagcaaagagaagtat--tagaagtgtccttgagcaatttgtaattcagagtgattatagtgtaatccctttgaagtgaaagggga 16153005  T
Q  213 ctgaactactcctatgttgtgggaggaaccagtataaaatt 253  Q
     || ||||||||| |||||||| |||||| |||||||||||    
T  16153006 ttggactactcctctgttgtggaaggaactagtataaaatt 16153046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 136 - 275
Target Start/End: Original strand, 26655295 - 26655434
Alignment:
Q  136 gaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtggg 235  Q
    ||||||||||||||| |||||||  |||| |||||||  | |||||||| ||||||||||||| ||||| |||||| ||| || |||||| |||||||||    
T  26655295 gaagtctcttggaagggtccttggacaatttgtaatcatgtgtgattatagtgaaatcccttgaaagtgcaaggggactggaccactcctgtgttgtggg 26655394  T
Q  236 aggaaccagtataaaattactctgtgtgtgctttctctct 275  Q
    |||||||||||||||||| || ||||| | || |||||||    
T  26655395 aggaaccagtataaaattgctttgtgtctcctctctctct 26655434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 17418178 - 17418295
Alignment:
Q  135 agaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgg 234  Q
    |||||||||||  |||||||||||| |||| ||||||| ||||||||||| ||||||| ||||||||| | |||||| ||| ||||||||| ||||||||    
T  17418178 agaagtctcttaaaagagtccttgagcaat-tgtaatcaagagtgattatagtgaaattccttggaagcgcaaggggactggactactcctgtgttgtgg 17418276  T
Q  235 gaggaaccagtataaaatt 253  Q
    ||||||||| |||||||||    
T  17418277 gaggaaccaatataaaatt 17418295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 102 - 368
Target Start/End: Complemental strand, 21823116 - 21822846
Alignment:
Q  102 atagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaa 201  Q
    |||||||||||||| || | ||||||| ||   ||||||  |||||  | |||||||| ||| |||||||| ||||||||||| ||||||||||||||||    
T  21823116 atagaagtttcttgcagctgtgcttgagcaaaaagaagttgcttggttgtgtccttgagcaagctgtaatcgagagtgattatagtgaaatcccttggaa 21823017  T
Q  202 gtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaa---attactctgtgtgtgctttctctctaactc-tttatttttctgttatg 297  Q
    ||| || ||| ||| ||||||||| ||||||||||||||||  ||||||    ||  | | ||| | || ||||||| |||| ||||| |||||||| ||    
T  21823016 gtgcaatgggactggactactcctgtgttgtgggaggaaccgatataaattggtttatgtctgtcttctctctctctgactcttttatctttctgttttg 21822917  T
Q  298 t-tttccgctgcattcagactctgagtcagaatctgcaacatccgattctgactaggtattttataaacact 368  Q
    | |||||||||||||||| | ||||||||||||| ||| ||||  ||||||  ||||| | |||||||||||    
T  21822916 tatttccgctgcattcaggccctgagtcagaatcagcagcatcaaattctggttaggt-tcttataaacact 21822846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 26653869 - 26654067
Alignment:
Q  12 agcaaagggaagtctcatggagttgtccttaaacaat-aagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtt 110  Q
    ||||||| |||||||| ||||||| ||||| |  ||  |||||||||||||||||| || | |||||||| || || |||||||||| |  |  ||||||    
T  26653869 agcaaagagaagtctcttggagttttccttgagtaaggaagtctttaggtagtgtcctatatcaggaagtattgagcagttgtgcttgaggaaggaagtt 26653968  T
Q  111 tcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaaggg 210  Q
    |   | |||| ||||||| ||  ||||||||||||||||| |||||||| |||| ||||||||| ||||||||| |||||||| |||||||||| |||||    
T  26653969 ttgagcagttgtgcttgagcaa-gagaagtctcttggaagtgtccttgaccaatttgtaatccaaagtgattatagtgaaatcacttggaagtgcaaggg 26654067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 21770253 - 21770366
Alignment:
Q  136 gaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtggg 235  Q
    |||||||||||||||||||||||| |||| ||||||| ||   |||||| |||||||| ||| |||||| |||||| ||| | |||||| ||||||||||    
T  21770253 gaagtctcttggaagagtccttgagcaat-tgtaatctagtaagattatagtgaaatctcttagaagtgcaaggggactggattactcccatgttgtggg 21770351  T
Q  236 aggaaccagtataaa 250  Q
    |||||||| ||||||    
T  21770352 aggaaccaatataaa 21770366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 19564068 - 19563955
Alignment:
Q  136 gaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtggg 235  Q
    |||||||||||||||||||||| |  ||| |||||||   |||||||||  |||| ||||||||||||| ||||||  || || |||| | |||||||||    
T  19564068 gaagtctcttggaagagtccttcagtaat-tgtaatcagtagtgattataatgaattcccttggaagtgcaaggggattggaccactcatgtgttgtggg 19563970  T
Q  236 aggaaccagtataaa 250  Q
    |||||||||||||||    
T  19563969 aggaaccagtataaa 19563955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 24216647 - 24216765
Alignment:
Q  135 agaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgg 234  Q
    |||||||| | ||||| ||||||||||||| |||||| ||||||||||||  | ||| || ||| ||||| | |||| ||| ||||||||| ||||||||    
T  24216647 agaagtctataggaagggtccttgatcaatttgtaattcagagtgattatattaaaaccctttgcaagtgcagggggactggactactcctgtgttgtgg 24216746  T
Q  235 gaggaaccagtataaaatt 253  Q
     || |||||| ||||||||    
T  24216747 aagaaaccagaataaaatt 24216765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 16157998 - 16158065
Alignment:
Q  186 gtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaaatt 253  Q
    ||||| ||||||  |||||||||||||||| ||||||| | ||||||||||||||| |||||||||||    
T  16157998 gtgaattccctttaaagtgaaagggggctggactactcatgtgttgtgggaggaactagtataaaatt 16158065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 21548980 - 21549054
Alignment:
Q  176 agtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaa 250  Q
    ||||||||| |||||||||||| |||||| ||||||| || ||||||||| ||| ||||||  ||||||||||||    
T  21548980 agtgattatagtgaaatcccttagaagtgtaagggggttggactactcctgtgtcgtgggataaaccagtataaa 21549054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 137 - 330
Target Start/End: Complemental strand, 21823939 - 21823740
Alignment:
Q  137 aagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatc-ccttggaagtgaaagggggctgaactactcctatgttgtggg 235  Q
    |||||||||||  | |||||||| | |  ||||||||||||||||||| |||||||| | ||| ||||  ||||||  || ||||||||| |||||||||    
T  21823939 aagtctcttggttgtgtccttgagcgagttgtaatccagagtgattatagtgaaatctctttgaaagtataaggggattggactactcctgtgttgtggg 21823840  T
Q  236 aggaaccagtataaaattactctgtgtgtg----ctttctctctaactc-tttatttttctgttatgt-tttccgctgcattcagactctgagtcagaat 329  Q
    ||||||  |||| |||||  | ||||| ||    || ||||||| |||| ||||| |||||||| ||| ||| |||||||||||||||| |||||| |||    
T  21823839 aggaacatgtat-aaattgttatgtgtatgtcttctctctctctgactcttttatctttctgttttgtattttcgctgcattcagactcggagtcaaaat 21823741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 27766113 - 27766239
Alignment:
Q  123 gcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactact 222  Q
    |||||| ||||  ||||||| ||| ||  |||||||| |||| ||||||| || |||||||| ||||||| ||||||||||| |||||| ||| ||||||    
T  27766113 gcttgagcatttggaagtcttttgaaattgtccttgagcaat-tgtaatctagtgtgattatagtgaaattccttggaagtgtaaggggactggactact 27766211  T
Q  223 cctatgttgtgggaggaaccagtataaa 250  Q
     ||   |||| |||||||| ||||||||    
T  27766212 tctggtttgtaggaggaacaagtataaa 27766239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 301 - 334
Target Start/End: Original strand, 24216861 - 24216894
Alignment:
Q  301 tccgctgcattcagactctgagtcagaatctgca 334  Q
    ||||||||||||||||||||||||||||||||||    
T  24216861 tccgctgcattcagactctgagtcagaatctgca 24216894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 17435699 - 17435627
Alignment:
Q  178 tgattatggtgaaatcccttggaagtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaa 250  Q
    ||||||| ||||||||||||||||||| || ||| ||| | ||||| | | |||| |||||||||||||||||    
T  17435699 tgattatagtgaaatcccttggaagtgcaaagggactggagtactcttgttttgtaggaggaaccagtataaa 17435627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 22132760 - 22132844
Alignment:
Q  15 aaagggaagtctcatggagttgtccttaaacaa-taagtctttaggtagtgtcatagagc-aggaagtcttaagtagttgtgctt 97  Q
    ||||||||||||| ||||||||||||| | |||  |||||||||| ||||| | |||||| |||||||||| |||||||| ||||    
T  22132760 aaagggaagtctcttggagttgtccttgagcaaggaagtctttagatagtgacctagagcaaggaagtcttgagtagttgggctt 22132844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 105 - 298
Target Start/End: Complemental strand, 25254 - 25059
Alignment:
Q  105 gaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtg 204  Q
    ||||| ||||| | || ||||||| |||| |||||||| |||||||||||||||| |||| ||||||||| ||||||||| |||||| ||||||||||||    
T  25254 gaagtgtcttgcaattgtgcttgagcattaagaagtctattggaagagtccttgagcaatttgtaatccaaagtgattatagtgaaaccccttggaagtg 25155  T
Q  205 aaagggggctgaactactcctatgttgtgggaggaaccagtataaaattactctgtgtgtgctt--tctctctaactctttatttttctgttatgt 298  Q
     ||||||  || ||||||||| | ||||||||||||||| |||||||||  | ||||| |||||  |||||||  |||||||| ||| ||||||||    
T  25154 caaggggattggactactcctttattgtgggaggaaccaatataaaattgttttgtgtttgctttgtctctctgtctctttatctttgtgttatgt 25059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 25318 - 25250
Alignment:
Q  12 agcaaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagt 80  Q
    ||||||| |||||||| | ||||||||||  | ||| |||||| ||||||||||| | |||||||||||    
T  25318 agcaaagagaagtctcttagagttgtcctagagcaagaagtctctaggtagtgtccttgagcaggaagt 25250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 104 - 275
Target Start/End: Original strand, 2226 - 2397
Alignment:
Q  104 agaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagt 203  Q
    |||||| | ||| |||| |||||||  ||| | ||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||  ||||||||    
T  2226 agaagtcttttgcagttgtgcttgacaattaataagtctcttggaagagtccttgagcaatttgtaatccagagtgattatagtgaaatcttttggaagt 2325  T
Q  204 gaaagggggctgaactactcctatgttgtgggaggaaccagtataaaattactctgtgtgtgctttctctct 275  Q
    | |||||| ||  ||||||| |||||| |||||||||||||||||||||| || | ||| |||| |||||||    
T  2326 gcaaggggactagactactcatatgttctgggaggaaccagtataaaatttctttttgtctgctctctctct 2397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 2163 - 2248
Alignment:
Q  12 agcaaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgctt 97  Q
    |||||| ||||||||| |||| || ||||| | ||| |||||||||||||||||| |||| || ||||||||  | ||||||||||    
T  2163 agcaaacggaagtctcttggaattttccttgagcaagaagtctttaggtagtgtcctagatcaagaagtcttttgcagttgtgctt 2248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 115 - 275
Target Start/End: Original strand, 30601 - 30761
Alignment:
Q  115 gtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggct 214  Q
    |||||| ||||||| |||||||||||||  | ||||||||||||| |||| ||||||||| ||| ||||| |||||| |||||||||||| ||||||  |    
T  30601 gtagttgtgcttgagcattgagaagtctactagaagagtccttgagcaatttgtaatccaaagtaattatagtgaaaccccttggaagtgcaaggggatt 30700  T
Q  215 gaactactcctatgttgtgggaggaaccagtataaaattactctgtgtgtgctttctctct 275  Q
    | ||||||||| | ||| ||||||||||| |||||||||  | ||||| ||||||||||||    
T  30701 ggactactccttttttgagggaggaaccaatataaaattgatttgtgtttgctttctctct 30761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 111 - 253
Target Start/End: Original strand, 18067 - 18209
Alignment:
Q  111 tcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaaggg 210  Q
    ||||| |||| ||||||| ||| ||||||| |||||||||||||||||| |||| | ||||||||||||||||| |||||| | |||||||||  ||||     
T  18067 tcttgcagttgtgcttgagcatagagaagtatcttggaagagtccttgagcaatttttaatccagagtgattatagtgaaacctcttggaagtacaagga 18166  T
Q  211 ggctgaactactcctatgttgtgggaggaaccagtataaaatt 253  Q
    | ||  ||||||||| |||||| |||||||||| |||||||||    
T  18167 gactcgactactcctttgttgtaggaggaaccaatataaaatt 18209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 17997 - 18063
Alignment:
Q  12 agcaaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaa 78  Q
    ||||||| |||||||| ||||||||||||  | ||| ||||||||||||| |||| ||| |||||||    
T  17997 agcaaagagaagtctcttggagttgtcctagagcaagaagtctttaggtattgtcctagggcaggaa 18063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 382305 - 382174
Alignment:
Q  117 agttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctga 216  Q
    |||| ||||||| |||| ||||||||||||||||||||||||| |||| |||||||  |||||||||| |||||||| ||| ||| || ||||||  ||     
T  382305 agttgtgcttgagcattaagaagtctcttggaagagtccttgagcaatttgtaatcatgagtgattatagtgaaatctcttagaactgcaaggggagtgg 382206  T
Q  217 actactcctatgttgtgggaggaaccagtata 248  Q
    ||||||||| |||||||| |||||| ||||||    
T  382205 actactcctgtgttgtggaaggaactagtata 382174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 382378 - 382315
Alignment:
Q  15 aaagggaagtctcatggagttgtccttaaacaataagtctttaggtagtgtcatagagcaggaa 78  Q
    |||| |||||||| ||||||||| ||| | ||| |||||||||||||||||| |||||||||||    
T  382378 aaagagaagtctcttggagttgttcttgagcaagaagtctttaggtagtgtcctagagcaggaa 382315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 102 - 253
Target Start/End: Complemental strand, 1199 - 1048
Alignment:
Q  102 atagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaa 201  Q
    |||||||| ||||| |||| ||||||| ||||| ||||||||||||||| ||||||||  ||| |||||||  | ||||| || |||||||| |||||||    
T  1199 atagaagtctcttgcagttgtgcttgagcattgcgaagtctcttggaagtgtccttgagaaatttgtaatcgtgtgtgatcatagtgaaatctcttggaa 1100  T
Q  202 gtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaaatt 253  Q
    ||| |||| | ||| |||||||||   |||| |||||||||| |||||||||    
T  1099 gtgtaaggagactggactactcctggattgtaggaggaaccaatataaaatt 1048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0772 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 410 - 360
Alignment:
Q  304 gctgcattcagactctgagtcagaatctgcaacatccgattctgactaggt 354  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||| ||||||    
T  410 gctgcatttagactctgagtcagaatttgcaacatcagattctgtctaggt 360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 1160 - 1278
Alignment:
Q  136 gaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggg-gctgaactactcctatgttgtgg 234  Q
    ||||||||||||||| |||||  | |||| || ||||   ||||||||| ||||||||||||||| ||| ||||||  | || ||||| |||  |||| |    
T  1160 gaagtctcttggaagtgtcctctagcaatttgcaatcagtagtgattatagtgaaatcccttggatgtgcaaggggtccggacctacttctagattgtag 1259  T
Q  235 gaggaaccagtataaaatt 253  Q
    |||||||||||||||||||    
T  1260 gaggaaccagtataaaatt 1278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 9223 - 9341
Alignment:
Q  136 gaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggg-gctgaactactcctatgttgtgg 234  Q
    ||||||||||||||| |||||  | |||| || ||||   ||||||||| ||||||||||||||| ||| ||||||  | || ||||| |||  |||| |    
T  9223 gaagtctcttggaagtgtcctctagcaatttgcaatcagtagtgattatagtgaaatcccttggatgtgcaaggggtccggacctacttctagattgtag 9322  T
Q  235 gaggaaccagtataaaatt 253  Q
    |||||||||||||||||||    
T  9323 gaggaaccagtataaaatt 9341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 5870 - 5915
Alignment:
Q  299 tttccgctgcattcagactctgagtcagaatctgcaacatccgatt 344  Q
    ||||||||||||||||||||||||||||||| || |||||| ||||    
T  5870 tttccgctgcattcagactctgagtcagaatatgaaacatcagatt 5915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 101 - 250
Target Start/End: Complemental strand, 11606 - 11458
Alignment:
Q  101 catagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttgga 200  Q
    ||||||||| | ||| |||| ||||||| ||||||||||||||||||    ||||||||  ||  |||||||||  |||||||| ||||||| | |||||    
T  11606 catagaagtcttttgcagttgtgcttgagcattgagaagtctcttgggtatgtccttgagaaaattgtaatcca-tgtgattatagtgaaattcgttgga 11508  T
Q  201 agtgaaagggggctgaactactcctatgttgtgggaggaaccagtataaa 250  Q
    || | ||| || || || ||||||||  |||| |||||||||| ||||||    
T  11507 agagcaagtggactaaaatactcctagtttgtaggaggaaccattataaa 11458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 78689 - 78640
Alignment:
Q  298 ttttccgctgcattcagactctgagtcagaatctgcaacatccgattctg 347  Q
    ||||||| |||||||||||||| ||||| ||||||||||||| |||||||    
T  78689 ttttccgttgcattcagactctaagtcataatctgcaacatcagattctg 78640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 128518 - 128394
Alignment:
Q  101 catagaagtttcttgtagttatgcttgaacattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttgga 200  Q
    |||| |||| ||||| |||| |||||||  |  |||||||||||||| || |||||| | | |  ||||||||| |||| |||| |||||||| |||| |    
T  128518 catataagtctcttgcagttgtgcttgagaaaagagaagtctcttggtagtgtccttaagctaattgtaatccatagtggttattgtgaaatctcttgca 128419  T
Q  201 agtgaaagggggctgaactactcct 225  Q
    |||| |||||| ||| |||||||||    
T  128418 agtgcaaggggactggactactcct 128394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 10796 - 10892
Alignment:
Q  130 cattgagaagtctcttggaagagtccttgatcaatctgtaatccagagtgattatggtgaaatcccttggaagtgaaagggggctgaactactcctat 227  Q
    ||||||||||||||||||  |  ||||||| |||  ||||||| ||| ||||||| |||||| ||||  |||||| |||||| ||| |||||||||||    
T  10796 cattgagaagtctcttggt-gtttccttgaacaaattgtaatcaagattgattatagtgaaaaccctgtgaagtgcaaggggactggactactcctat 10892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University