View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3332_high_2 (Length: 513)

Name: NF3332_high_2
Description: NF3332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3332_high_2
NF3332_high_2
[»] chr1 (23 HSPs)
chr1 (1-347)||(47550712-47551058)
chr1 (100-268)||(34475899-34476067)
chr1 (67-259)||(31032695-31032887)
chr1 (65-268)||(20808947-20809150)
chr1 (124-268)||(29095577-29095721)
chr1 (93-260)||(1270179-1270346)
chr1 (66-268)||(42480121-42480325)
chr1 (400-494)||(47550572-47550666)
chr1 (128-258)||(24135765-24135893)
chr1 (105-268)||(34807936-34808099)
chr1 (93-259)||(9098593-9098756)
chr1 (64-268)||(16254855-16255058)
chr1 (66-260)||(45010208-45010401)
chr1 (100-209)||(2958727-2958831)
chr1 (100-221)||(44714839-44714960)
chr1 (143-267)||(4194767-4194891)
chr1 (183-268)||(41646576-41646660)
chr1 (160-268)||(50663730-50663839)
chr1 (200-268)||(7167455-7167523)
chr1 (124-175)||(4624438-4624489)
chr1 (123-228)||(48148830-48148930)
chr1 (155-225)||(27143644-27143714)
chr1 (232-268)||(2958833-2958869)
[»] chr4 (17 HSPs)
chr4 (66-268)||(18375388-18375589)
chr4 (100-268)||(24683076-24683244)
chr4 (93-268)||(41633217-41633391)
chr4 (66-268)||(17847539-17847736)
chr4 (100-268)||(26179241-26179409)
chr4 (68-209)||(54358171-54358312)
chr4 (93-254)||(37674024-37674185)
chr4 (93-270)||(23348137-23348318)
chr4 (125-268)||(47281588-47281735)
chr4 (93-228)||(47838967-47839101)
chr4 (93-211)||(4512187-4512305)
chr4 (93-192)||(41878592-41878691)
chr4 (133-228)||(30508982-30509076)
chr4 (183-257)||(41878332-41878406)
chr4 (68-209)||(54021241-54021385)
chr4 (220-268)||(4098532-4098580)
chr4 (125-157)||(41497949-41497981)
[»] chr2 (20 HSPs)
chr2 (66-268)||(13685993-13686195)
chr2 (124-259)||(42263840-42263975)
chr2 (100-247)||(25414934-25415081)
chr2 (67-248)||(14940985-14941167)
chr2 (93-253)||(3810293-3810453)
chr2 (100-259)||(41464930-41465089)
chr2 (68-248)||(35323474-35323654)
chr2 (67-260)||(45093147-45093336)
chr2 (93-244)||(19898943-19899094)
chr2 (124-268)||(28429281-28429425)
chr2 (141-259)||(35676349-35676467)
chr2 (126-259)||(29689277-29689407)
chr2 (128-268)||(2752692-2752832)
chr2 (124-268)||(16058427-16058572)
chr2 (159-260)||(23454350-23454452)
chr2 (93-187)||(28716341-28716435)
chr2 (167-268)||(28716437-28716538)
chr2 (101-227)||(40126532-40126658)
chr2 (104-268)||(36690856-36691019)
chr2 (222-255)||(41464911-41464944)
[»] chr3 (20 HSPs)
chr3 (100-268)||(36517514-36517682)
chr3 (100-268)||(521795-521963)
chr3 (66-267)||(50612871-50613072)
chr3 (93-268)||(38176413-38176588)
chr3 (100-259)||(1561286-1561445)
chr3 (65-257)||(23642975-23643167)
chr3 (70-268)||(45166226-45166424)
chr3 (65-268)||(31788305-31788508)
chr3 (93-268)||(20912167-20912342)
chr3 (128-268)||(34624535-34624674)
chr3 (66-265)||(39145254-39145453)
chr3 (95-259)||(52546751-52546915)
chr3 (128-272)||(51297084-51297227)
chr3 (116-225)||(22650442-22650551)
chr3 (198-268)||(43203248-43203318)
chr3 (124-228)||(9496570-9496674)
chr3 (215-268)||(544634-544687)
chr3 (148-228)||(38169330-38169408)
chr3 (173-210)||(29011343-29011380)
chr3 (222-255)||(31788459-31788492)
[»] chr5 (20 HSPs)
chr5 (93-259)||(4391869-4392035)
chr5 (93-268)||(32891174-32891349)
chr5 (93-259)||(37093935-37094101)
chr5 (96-268)||(228023-228195)
chr5 (68-269)||(34286593-34286793)
chr5 (66-259)||(8692517-8692710)
chr5 (124-247)||(3456773-3456896)
chr5 (125-259)||(11739275-11739409)
chr5 (124-260)||(29223473-29223607)
chr5 (125-248)||(38614236-38614362)
chr5 (128-259)||(35672369-35672499)
chr5 (95-260)||(28434209-28434374)
chr5 (155-268)||(41326534-41326647)
chr5 (93-191)||(40925912-40926010)
chr5 (124-189)||(6614301-6614366)
chr5 (93-268)||(5481358-5481527)
chr5 (191-249)||(31644657-31644715)
chr5 (116-225)||(16516963-16517072)
chr5 (170-227)||(42148899-42148956)
chr5 (125-173)||(31644721-31644769)
[»] chr6 (6 HSPs)
chr6 (102-260)||(7646807-7646965)
chr6 (93-259)||(25935517-25935683)
chr6 (132-248)||(12607123-12607239)
chr6 (95-225)||(29487541-29487671)
chr6 (189-268)||(17366850-17366929)
chr6 (142-224)||(29636999-29637081)
[»] chr8 (19 HSPs)
chr8 (124-268)||(4851733-4851877)
chr8 (93-268)||(41322529-41322704)
chr8 (66-259)||(29314008-29314201)
chr8 (93-268)||(15561938-15562113)
chr8 (100-246)||(36473080-36473226)
chr8 (125-260)||(34392116-34392251)
chr8 (105-258)||(39112658-39112811)
chr8 (132-268)||(8551489-8551625)
chr8 (65-237)||(2001679-2001850)
chr8 (100-248)||(11653742-11653893)
chr8 (124-259)||(1005598-1005733)
chr8 (123-227)||(11643324-11643428)
chr8 (133-239)||(37919603-37919709)
chr8 (148-228)||(4794161-4794241)
chr8 (67-170)||(33888946-33889049)
chr8 (189-268)||(3607036-3607115)
chr8 (131-228)||(5548975-5549072)
chr8 (230-268)||(1196507-1196545)
chr8 (222-260)||(36473056-36473094)
[»] chr7 (9 HSPs)
chr7 (93-265)||(27425777-27425949)
chr7 (100-268)||(23991981-23992149)
chr7 (125-260)||(22326866-22327001)
chr7 (124-268)||(17611842-17611986)
chr7 (103-268)||(8307525-8307687)
chr7 (65-227)||(42195418-42195580)
chr7 (158-228)||(41405803-41405873)
chr7 (155-227)||(25686406-25686478)
chr7 (201-268)||(19479441-19479508)
[»] scaffold0002 (1 HSPs)
scaffold0002 (124-259)||(492675-492810)
[»] scaffold0132 (2 HSPs)
scaffold0132 (161-267)||(537-642)
scaffold0132 (161-267)||(8497-8602)
[»] scaffold0067 (1 HSPs)
scaffold0067 (133-223)||(19328-19417)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 47551058 - 47550712
Alignment:
Q  1 agattgatcattattcggattgatttggattcattataaacccattctctcggtaccttaatcaaaaggaaaatgttatttctctnnnnnnntagcatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       |||||| |    
T  47551058 agattgatcattattcggattgatttggattcattataaacccattctctcggtaccttaatcaaaaagaaaatgttatttctctagaaaaatagcatca 47550959  T
Q  101 agaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgca 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  47550958 agaatttttcaagaaacagctggcaagttttaattgcatgatttatatgttcatttcctattttttagtcacacctccttaaattgtggcaaatagtgca 47550859  T
Q  201 ttgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctccaatcaaaaacatgattttgtataaggaagag 300  Q
    |||| |||  | |||||||||||||||||  || || ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  47550858 ttgtaatttgctgctctttattcttgaaatttttttaatgttatttttatagagatattgcattgctccaatcaaaaacatgattttgtataaggaagag 47550759  T
Q  301 aaaaaaaaggaactaaagcaatgattcataccatctaattttgtgtt 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  47550758 aaaaaaaaggaactaaagcaatgattcataccatctaattttgtgtt 47550712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 100 - 268
Target Start/End: Complemental strand, 34476067 - 34475899
Alignment:
Q  100 aagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgc 199  Q
    ||||||||||||||| | ||||  |||||||||||||||||||| || |||||| ||||||||||| |||||||||||||||||||| |||| |||||||    
T  34476067 aagaatttttcaagacaaagctgacaagttttaattgcatgattgatttgttcacttcctatttttcagccacacctccttgaattggggcagatagtgc 34475968  T
Q  200 attgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    |||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  34475967 attgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagcattgctc 34475899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 67 - 259
Target Start/End: Original strand, 31032695 - 31032887
Alignment:
Q  67 aggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctatttttt 166  Q
    ||||||||||||||| |||       |||||| ||||||||||||||| |||| |  ||||||||||||||||||||||| |||||| || ||||||||     
T  31032695 aggaaaatgttatttttctagaaaaatagcatcaagaatttttcaagatacagttgacaagttttaattgcatgatttatttgttcactttctatttttc 31032794  T
Q  167 agccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatata 259  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||||| ||||||||||    
T  31032795 agccacacctccttgaactgtggcaaatagtgcattgtgattgactgatctttattcttgaagaattcttgatgatatttttctagagatata 31032887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 20809150 - 20808947
Alignment:
Q  65 aaaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctatttt 164  Q
    |||||||||| ||||||||||       |||||| ||||||||||||||| || | | ||||||||||||| |||| |||||  ||||| |||||| |||    
T  20809150 aaaggaaaattttatttctctagaaaaatagcatcaagaatttttcaagatacgggtggcaagttttaattacatggtttattcgttcacttcctagttt 20809051  T
Q  165 ttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtatt 264  Q
    | ||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| |||    
T  20809050 tcagccacatctccttgaattgtggcaaataatgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttctagagatatagcatt 20808951  T
Q  265 gctc 268  Q
    ||||    
T  20808950 gctc 20808947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 124 - 268
Target Start/End: Original strand, 29095577 - 29095721
Alignment:
Q  124 caagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattc 223  Q
    ||||||||||||||||||| | | |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  29095577 caagttttaattgcatgatatctttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattc 29095676  T
Q  224 ttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||| ||||||||||||||||||| ||||||||||  |||||||    
T  29095677 ttgaagaattcttgatgttatttttctagagatataacattgctc 29095721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 93 - 260
Target Start/End: Complemental strand, 1270346 - 1270179
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| || |||||||||||| |||| |  ||||||||||||||| ||||||| | |||| ||||||||||| |||||||||| |||||||||||||||    
T  1270346 tagcatcaaaaatttttcaagacacagttgacaagttttaattgcacgatttatttattcacttcctatttttcagccacaccttcttgaattgtggcaa 1270247  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatag 260  Q
    ||||||||||| |||||   |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  1270246 atagtgcattgagattggttgctctttattcttgaagaattcttgatgttatttttctagagatatag 1270179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 66 - 268
Target Start/End: Complemental strand, 42480325 - 42480121
Alignment:
Q  66 aaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaaca--gctagcaagttttaattgcatgatttatatgttcatttcctattt 163  Q
    ||||||||||||||||||||       |||||| ||||||||||||||| |||  ||  ||||||||||||||||| |||||| | ||||||| ||||||    
T  42480325 aaggaaaatgttatttctctagaaaaatagcatcaagaatttttcaagagacacagcatgcaagttttaattgcataatttatttattcattttctattt 42480226  T
Q  164 tttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtat 263  Q
    || ||||||||||| ||||||||||| ||||| | |||||| |||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||  ||    
T  42480225 ttcagccacacctcattgaattgtggtaaataatacattgtaattgactgctatttattcttgaagaattcttgatgttatttttgtagagatataacat 42480126  T
Q  264 tgctc 268  Q
    |||||    
T  42480125 tgctc 42480121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 400 - 494
Target Start/End: Complemental strand, 47550666 - 47550572
Alignment:
Q  400 agtacataccatctaattatttgacattcaatcaatccgaattagtgaatccttcggtcgggcggacccatgaccagataaaccccagtgattgc 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47550666 agtacataccatctaattatttgacattcaatcaatccgaattagtgaatccttcggtcgggcggacccatgaccagataaaccccggtgattgc 47550572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 128 - 258
Target Start/End: Complemental strand, 24135893 - 24135765
Alignment:
Q  128 ttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttga 227  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||  ||||||||||||| | |||||||||||||||    
T  24135893 ttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat--tgcattgtgattggctgctctttattcttga 24135796  T
Q  228 aaaattcttgatgttatttttatagagatat 258  Q
    | ||||||||||||||||||| | |||||||    
T  24135795 agaattcttgatgttatttttcttgagatat 24135765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 105 - 268
Target Start/End: Complemental strand, 34808099 - 34807936
Alignment:
Q  105 tttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgt 204  Q
    |||||||||| ||| ||||||||||||||||||||||||||| | |||| ||| ||||||| |||||||||||||| |||| ||  ||||||| ||||||    
T  34808099 tttttcaagagacaactagcaagttttaattgcatgatttatttattcacttcatatttttcagccacacctccttaaattatgataaatagtacattgt 34808000  T
Q  205 gattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||  |||||||||  |||||||    
T  34807999 gattgactgctctttatttttgaagaattcttgatgttatttttcgagagatataaaattgctc 34807936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 9098593 - 9098756
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| ||||||||||||| | ||||||  ||||||||||||||||||||||| |||||| ||| |||| || |||||||||| |||||||   ||||     
T  9098593 tagcatcaagaatttttcaaaacacagctgacaagttttaattgcatgatttatttgttcacttcgtattattcagccacaccttcttgaat---ggcag 9098689  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatata 259  Q
    ||||||||||||||||| | ||||||||||||| || ||||||||||||||||||| ||||||||||    
T  9098690 atagtgcattgtgattggctgctctttattcttaaagaattcttgatgttatttttctagagatata 9098756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 64 - 268
Target Start/End: Complemental strand, 16255058 - 16254855
Alignment:
Q  64 aaaaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattt 163  Q
    |||||||||||| |||||||||       |||||| ||||||||||||| | ||| ||  |||  |||||||| ||||||||| |||||| ||||||||     
T  16255058 aaaaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaatacacaactgacaaaatttaattgtatgatttatttgttcacttcctatta 16254959  T
Q  164 tttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtat 263  Q
    || |||||||||||||| |||| ||||||||||||||||||||||| | | |||||||||||||| ||||||| |||||||||||  | ||||||| |||    
T  16254958 ttcagccacacctccttaaattatggcaaatagtgcattgtgattggctgatctttattcttgaagaattctt-atgttatttttccaaagatataatat 16254860  T
Q  264 tgctc 268  Q
    |||||    
T  16254859 tgctc 16254855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 66 - 260
Target Start/End: Complemental strand, 45010401 - 45010208
Alignment:
Q  66 aaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttt 165  Q
    |||||| |||||||||||||       |||||| ||||||||||||| | ||| ||  ||| ||||||||||||||||||| |||||| ||| |||||||    
T  45010401 aaggaagatgttatttctctagaaaaatagcataaagaatttttcaaaacacatctgacaaattttaattgcatgatttatttgttcacttcttattttt 45010302  T
Q  166 tagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatag 260  Q
     |||||||||| | ||||||||| |||||| |||||| |  |||   ||||||||||||| || ||||||||||||||| ||| |||||||||||    
T  45010301 cagccacaccttc-tgaattgtgacaaataatgcattatatttggatgctctttattcttaaagaattcttgatgttatctttttagagatatag 45010208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 209
Target Start/End: Original strand, 2958727 - 2958831
Alignment:
Q  100 aagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgc 199  Q
    ||||||||||||||| |||||| |||     |||||||||||||||| |||||| | ||||||||| ||||||||||||||||||| |||||||||||||    
T  2958727 aagaatttttcaagacacagctggca-----taattgcatgatttatttgttcactccctatttttcagccacacctccttgaattttggcaaatagtgc 2958821  T
Q  200 attgtgattg 209  Q
    ||||||||||    
T  2958822 attgtgattg 2958831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 44714839 - 44714960
Alignment:
Q  100 aagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgc 199  Q
    ||||||||||||||| | || | |||||||||||||| ||||||||| | || ||||  ||||||| ||||||| ||| ||||||||||||||||| |||    
T  44714839 aagaatttttcaagatatagttggcaagttttaattgtatgatttatttttttattttttatttttcagccacatctcgttgaattgtggcaaataatgc 44714938  T
Q  200 attgtgattgaccgctctttat 221  Q
    |||||||||||| |||||||||    
T  44714939 attgtgattgactgctctttat 44714960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 143 - 267
Target Start/End: Complemental strand, 4194891 - 4194767
Alignment:
Q  143 ttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgtt 242  Q
    |||| |||||| ||||||||||| || || | ||| ||||||| ||| |||||||  |||||||||||| | |||||||||||||| |||||||||||||    
T  4194891 ttatttgttcacttcctatttttcagtcatatctctttgaattatggtaaatagtatattgtgattgactgttctttattcttgaagaattcttgatgtt 4194792  T
Q  243 atttttatagagatatagtattgct 267  Q
    |||||| ||||||||||| ||||||    
T  4194791 atttttctagagatatagcattgct 4194767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 41646660 - 41646576
Alignment:
Q  183 attgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||||| || |||||||    
T  41646660 attgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattc-tgatgttatttttctagagatacagcattgctc 41646576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 268
Target Start/End: Complemental strand, 50663839 - 50663730
Alignment:
Q  160 attttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttat-ttttatagagatat 258  Q
    |||||| || ||||| |||||||||||||| ||||| |||||| | ||| || |||||||||||||| |||||| |||||||||| |||| |||||||||    
T  50663839 atttttcagtcacacgtccttgaattgtggtaaataatgcattatcattcactgctctttattcttgtaaaatttttgatgttattttttttagagatat 50663740  T
Q  259 agtattgctc 268  Q
    || |||||||    
T  50663739 agcattgctc 50663730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 7167455 - 7167523
Alignment:
Q  200 attgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    |||||||||||| | |||||||||||||| ||||||||| ||||||||| |||| |||||| |||||||    
T  7167455 attgtgattgactgttctttattcttgaagaattcttgacgttatttttttagaaatatagcattgctc 7167523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 4624489 - 4624438
Alignment:
Q  124 caagttttaattgcatgatttatatgttcatttcctattttttagccacacc 175  Q
    ||||||||||||||||||||||| |||||| ||||||||||| |||||||||    
T  4624489 caagttttaattgcatgatttatttgttcacttcctatttttcagccacacc 4624438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 48148930 - 48148830
Alignment:
Q  123 gcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttatt 222  Q
    |||||| || |||||||||||||| | |||| ||  ||||||| ||||||| ||||    ||||||| ||||||||||||| ||||||| | ||||||||    
T  48148930 gcaagtgtttattgcatgatttat-tattcactttttatttttcagccacatctcc----attgtggaaaatagtgcattgggattgactggtctttatt 48148836  T
Q  223 cttgaa 228  Q
    ||||||    
T  48148835 cttgaa 48148830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 27143644 - 27143714
Alignment:
Q  155 ttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattctt 225  Q
    ||||||||||| |  |||||||| || |||||| ||||||| | ||||||||||||| ||| |||||||||    
T  27143644 ttcctatttttcaatcacacctctttaaattgtagcaaataatacattgtgattgacggctttttattctt 27143714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 2958833 - 2958869
Alignment:
Q  232 ttcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  2958833 ttcttgatgttatttttctagagatatagcattgctc 2958869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 66 - 268
Target Start/End: Original strand, 18375388 - 18375589
Alignment:
Q  66 aaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttt 165  Q
    ||||||||||||||||||||       |||||| ||||||||||||||| ||| || |||||||||||||||||||||||| |||||| ||||||||||     
T  18375388 aaggaaaatgttatttctctagaaaaatagcatcaagaatttttcaagacacaactggcaagttttaattgcatgatttatttgttcacttcctattttc 18375487  T
Q  166 tagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattg 265  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||  ||||    
T  18375488 -agccacacctccttgaattgtggcaaatagtgcattgtgattgaccgcactttattcttgaagaattcttgatgttatttttctagagatataacattg 18375586  T
Q  266 ctc 268  Q
    |||    
T  18375587 ctc 18375589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 100 - 268
Target Start/End: Complemental strand, 24683244 - 24683076
Alignment:
Q  100 aagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgc 199  Q
    ||||||||||||||| |||  |   |||||||||||||||||||||| |||||| ||||||||||| || ||||||| | ||||||||||||||||||||    
T  24683244 aagaatttttcaagacacacttgataagttttaattgcatgatttatttgttcacttcctatttttcagtcacaccttcctgaattgtggcaaatagtgc 24683145  T
Q  200 attgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    |||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  24683144 attgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagcattgctc 24683076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 41633391 - 41633217
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| ||||||||||||||| | ||||  ||| |||||||| ||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  41633391 tagcatcaagaatttttcaagacaaagctgacaaattttaattacat-atttatttgttcacttcctatttttcagccacacctccttgaattgtggcaa 41633293  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
     |||||||||||||||| | |||||||||||||||| ||||||| ||||||||||| ||||||||||  |||||||    
T  41633292 gtagtgcattgtgattggctgctctttattcttgaagaattcttaatgttatttttctagagatataacattgctc 41633217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 66 - 268
Target Start/End: Original strand, 17847539 - 17847736
Alignment:
Q  66 aaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttt 165  Q
    ||||||||||||||||||||       |||||| ||||||||||||||| |||| | |||||||||||||||||||||||| |||||| || ||||||||    
T  17847539 aaggaaaatgttatttctctcgaaaaatagcatcaagaatttttcaagacacagttggcaagttttaattgcatgatttatttgttcactttctattttt 17847638  T
Q  166 tagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattg 265  Q
      | |||||||||||||||||||||     ||||||| |||||||| ||| |||| ||||||| |||| || ||||||||||| ||||||||||| ||||    
T  17847639 ctgtcacacctccttgaattgtggc-----gtgcattatgattgactgctttttaatcttgaagaattttttatgttatttttctagagatatagcattg 17847733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 100 - 268
Target Start/End: Original strand, 26179241 - 26179409
Alignment:
Q  100 aagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgc 199  Q
    |||||||||| || | ||||||  ||||||| ||||  ||||||||| |||||| ||||||||||| ||||||||||||||||||||||  |||||||||    
T  26179241 aagaattttttaaaacacagctgtcaagtttcaatttgatgatttatttgttcacttcctatttttcagccacacctccttgaattgtgttaaatagtgc 26179340  T
Q  200 attgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    | |||||||| | |||||||||||||||| ||||||| ||||||||||| ||||||||||  |||||||    
T  26179341 actgtgattggctgctctttattcttgaagaattcttaatgttatttttctagagatataacattgctc 26179409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 54358312 - 54358171
Alignment:
Q  68 ggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctatttttta 167  Q
    ||||||||||||||||||       |||||| ||||||||||||||| | || | |||||||||||||||||||||||| |||||| ||||||||||| |    
T  54358312 ggaaaatgttatttctctagaaaaatagcatcaagaatttttcaagacatagttggcaagttttaattgcatgatttatttgttcacttcctatttttca 54358213  T
Q  168 gccacacctccttgaattgtggcaaatagtgcattgtgattg 209  Q
    |||||||| |||| ||||||||||||||||||||||||||||    
T  54358212 gccacacccccttaaattgtggcaaatagtgcattgtgattg 54358171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 93 - 254
Target Start/End: Original strand, 37674024 - 37674185
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| ||||||||||||||| ||   |  ||||||||||||||||||||||| |||| | ||  ||||||| ||||||||||| ||||||||| | ||    
T  37674024 tagcatcaagaatttttcaagacacgtgtgacaagttttaattgcatgatttatttgttaactttttatttttcagccacacctctttgaattgtagtaa 37674123  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagag 254  Q
    ||||| ||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||    
T  37674124 atagtacattgtgattgactgctctttagtcttgaagaattcttgatgttatttttctagag 37674185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 93 - 270
Target Start/End: Original strand, 23348137 - 23348318
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcct---attttttagccacacctccttgaattgtgg 189  Q
    |||||| || |||||||||||||||| |   ||||||||||||||||||||||| |||||| |||||   |||||| ||||||||||||||||||| |||    
T  23348137 tagcatcaataatttttcaagaaacaaccgacaagttttaattgcatgatttatttgttcacttcctcctatttttcagccacacctccttgaattatgg 23348236  T
Q  190 caaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgtta-tttttatagagatatagtattgctcca 270  Q
     |||||||| |||||||||||  | ||||||||||| || |||| ||||||||| ||||| || |||||||| |||||||||    
T  23348237 taaatagtgtattgtgattgagtgttctttattcttaaagaattattgatgttattttttttaaagatatagcattgctcca 23348318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 125 - 268
Target Start/End: Original strand, 47281588 - 47281735
Alignment:
Q  125 aagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaatt----gtggcaaatagtgcattgtgattgaccgctcttta 220  Q
    |||||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||| |    |||||||||||||||||||||||   || ||||||    
T  47281588 aagttttaattgcatgatttatttgttcacttcctatttttcaaccacacctccttgaaattaatgtggcaaatagtgcattgtgatttgtcgttcttta 47281687  T
Q  221 ttcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    |||||||| ||||||||||||||||||| |||| |||||  |||||||    
T  47281688 ttcttgaagaattcttgatgttatttttctagacatataacattgctc 47281735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 47838967 - 47839101
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| ||||||||| ||||| |||||| |  || |||||||||||||| | | ||||||||| ||||||||  ||||||||||||| |||||||||||    
T  47838967 tagcatcaagaatttt-caagacacagctggtgagatttaattgcatgatgtttttgttcattttctatttttcggccacacctccttaaattgtggcaa 47839065  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaa 228  Q
    ||||| ||||||| ||||| ||||||||||||||||    
T  47839066 atagtacattgtggttgactgctctttattcttgaa 47839101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 4512187 - 4512305
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| ||||||||||||| |  ||| | ||||||||||||||||| |||||| |||| | ||||||||||| || |||| ||||||||||||||||||    
T  4512187 tagcatcaagaatttttcaatactcaggtggcaagttttaattgcatcatttatttgtttacttcctatttttcagtcacatctccttgaattgtggcaa 4512286  T
Q  193 atagtgcattgtgattgac 211  Q
    |||||  ||||||||||||    
T  4512287 atagtatattgtgattgac 4512305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 41878691 - 41878592
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| ||||||||||||||| | | ||  ||||||||||||||||||||||| |||| | ||||||||||| ||||||||||  ||||||||||||||    
T  41878691 tagcatcaagaatttttcaagacataactgacaagttttaattgcatgatttatttgtttacttcctatttttcagccacaccttattgaattgtggcaa 41878592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 30509076 - 30508982
Alignment:
Q  133 attgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaa 228  Q
    ||||||||| |||| |||||||||||||||||| ||  ||| |||  || |||| ||||||||||| ||||| |||||| ||||||||||||||||    
T  30509076 attgcatgacttat-tgttcatttcctatttttcagttacatctctgtgtattgcggcaaatagtgtattgtaattgactgctctttattcttgaa 30508982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 41878406 - 41878332
Alignment:
Q  183 attgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagata 257  Q
    ||||| ||||||||||||||||||||| | | ||||||||| |||| ||||| ||||||||||||| || |||||    
T  41878406 attgtagcaaatagtgcattgtgattggctgatctttattcatgaagaattcatgatgttatttttctatagata 41878332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 54021241 - 54021385
Alignment:
Q  68 ggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgca---tgatttatatgttcatttcctatttt 164  Q
    ||||||||||||||||||       |||||| |||||||||| |||| | ||||  ||||||||||||      || ||||| |||| | || |||||||    
T  54021241 ggaaaatgttatttctctagaaaaatagcatcaagaattttttaagataaagctgacaagttttaatttttaattgctttatttgtttactttctatttt 54021340  T
Q  165 ttagccacacctccttgaattgtggcaaatagtgcattgtgattg 209  Q
    | | |||||||||||| |||||||||| |||||||||||||||||    
T  54021341 tcaaccacacctccttaaattgtggcacatagtgcattgtgattg 54021385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 4098532 - 4098580
Alignment:
Q  220 attcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||||||| ||||||||||||||||||| ||||||||||  |||||||    
T  4098532 attcttgaagaattcttgatgttatttttctagagatataacattgctc 4098580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 41497949 - 41497981
Alignment:
Q  125 aagttttaattgcatgatttatatgttcatttc 157  Q
    |||||||||||||||||||||| ||||||||||    
T  41497949 aagttttaattgcatgatttatttgttcatttc 41497981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 66 - 268
Target Start/End: Complemental strand, 13686195 - 13685993
Alignment:
Q  66 aaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttt 165  Q
    |||||||||| |||||||||       |||||| |||||||||| |||| |||  | |||||||||||||||||||||||| |||||| |||||||||||    
T  13686195 aaggaaaatgctatttctctagaaaaatagcatcaagaattttttaagacacaattggcaagttttaattgcatgatttatttgttcacttcctattttt 13686096  T
Q  166 tagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattg 265  Q
     |||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  13686095 cagccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattcttgaaaaattcttgatgttatttttctagagatatagcattg 13685996  T
Q  266 ctc 268  Q
    |||    
T  13685995 ctc 13685993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 124 - 259
Target Start/End: Complemental strand, 42263975 - 42263840
Alignment:
Q  124 caagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattc 223  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| | |||||||||||    
T  42263975 caagttttaattgcataatttatttgttcatttcctatttttcagccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattc 42263876  T
Q  224 ttgaaaaattcttgatgttatttttatagagatata 259  Q
    ||||| ||||||||||||||||||| ||||||||||    
T  42263875 ttgaagaattcttgatgttatttttctagagatata 42263840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 100 - 247
Target Start/End: Complemental strand, 25415081 - 25414934
Alignment:
Q  100 aagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgc 199  Q
    ||||||||||||||| ||||||   |||||||||||||||||||||| |||||| || || ||||| ||||| |||||||||||||||||||||||||||    
T  25415081 aagaatttttcaagacacagctgataagttttaattgcatgatttatttgttcactttctttttttcagccatacctccttgaattgtggcaaatagtgc 25414982  T
Q  200 attgtgattgaccgctctttattcttgaaaaattcttgatgttatttt 247  Q
    |||||||||||| | |||||||||||||| ||||||||||||||||||    
T  25414981 attgtgattgactgttctttattcttgaagaattcttgatgttatttt 25414934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 67 - 248
Target Start/End: Original strand, 14940985 - 14941167
Alignment:
Q  67 aggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctatttttt 166  Q
    ||||||||| |||||||||       |||||| ||||||||||||||| ||| || ||||||||||||| |||||||||| |||||| ||| |||||||     
T  14940985 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacaactggcaagttttaatttcatgatttatttgttcacttcttatttttc 14941084  T
Q  167 -agccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttattttt 248  Q
     || |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  14941085 gagtcacacctctttgaattgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattattgatgttattttt 14941167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 93 - 253
Target Start/End: Original strand, 3810293 - 3810453
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| ||||| ||||||||| |||||| |||||||||||||||||||||||| |||||| ||| ||||||| || |||||||||||||||||||||||    
T  3810293 tagcatcaagaaattttcaagacacagctggcaagttttaattgcatgatttatttgttcacttcttatttttcagtcacacctccttgaattgtggcaa 3810392  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttataga 253  Q
    |||||||||||| |||| |  ||||||||||||||| |||| || ||||||||||| ||||    
T  3810393 atagtgcattgtaattggctactctttattcttgaagaattattaatgttatttttctaga 3810453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 41464930 - 41465089
Alignment:
Q  100 aagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgc 199  Q
    ||||||||||||||| |||| |  ||||||||||||||||||||||| |||||| || |||||||| | |||||||||||||||||| ||||||||||||    
T  41464930 aagaatttttcaagacacagttgacaagttttaattgcatgatttatttgttcactttctatttttcaaccacacctccttgaattgcggcaaatagtgc 41465029  T
Q  200 attgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatata 259  Q
    ||||||||   | || ||||||||||||| ||||||||||||||||||| ||||||||||    
T  41465030 attgtgatccgctgcactttattcttgaagaattcttgatgttatttttctagagatata 41465089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 68 - 248
Target Start/End: Original strand, 35323474 - 35323654
Alignment:
Q  68 ggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctatttttta 167  Q
    ||||||||||||||||||       ||| |||||||||||||  ||| |||| |  |||||||||||| ||||||||||||||||| ||  ||||||| |    
T  35323474 ggaaaatgttatttctctagaaaaatagtattaagaattttttcagacacagttgacaagttttaattacatgatttatatgttcagtttttatttttca 35323573  T
Q  168 gccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttattttt 248  Q
    |||||||||| |||||||||||||||||||| |||||||||||| | |||||||||||||| |||| ||||||||||||||    
T  35323574 gccacacctcattgaattgtggcaaatagtgtattgtgattgactgttctttattcttgaagaatttttgatgttattttt 35323654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 67 - 260
Target Start/End: Original strand, 45093147 - 45093336
Alignment:
Q  67 aggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctatttttt 166  Q
    |||||||||||||||||||       |||||| |||||||||| |||| |||| | | || ||||||||||||||||||  |||| | |||||||||||     
T  45093147 aggaaaatgttatttctctagaaaaatagcatcaagaattttttaagatacagttgggaaattttaattgcatgatttaattgtttacttcctatttttc 45093246  T
Q  167 agccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatag 260  Q
    || || ||||||||||||||||||||||||||||||||||||    |||||||||||||||| |||| |||||||||||||| |||||||||||    
T  45093247 agtcatacctccttgaattgtggcaaatagtgcattgtgatt----gctctttattcttgaagaattattgatgttatttttctagagatatag 45093336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 19899094 - 19898943
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| | ||||||||||||| ||| || |||||||||||||||||||||||| |||||| |||||| |||| ||| | |||||||||||||||| |||    
T  19899094 tagcatcacgaatttttcaagacacaactggcaagttttaattgcatgatttatttgttcacttcctaattttcagcaatacctccttgaattgtgacaa 19898995  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttat 244  Q
    ||| ||||||||||||| | |||||||||||||||| ||||||| |||||||    
T  19898994 ataatgcattgtgattggctgctctttattcttgaagaattcttaatgttat 19898943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 124 - 268
Target Start/End: Complemental strand, 28429425 - 28429281
Alignment:
Q  124 caagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattc 223  Q
    ||||||||||||||||||||||| |||||| ||| ||||||| || ||||||||||| |||| ||||||||| ||||||||| ||| | |||||||||||    
T  28429425 caagttttaattgcatgatttatttgttcacttcttatttttcagtcacacctccttaaattatggcaaataatgcattgtgtttggctgctctttattc 28429326  T
Q  224 ttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||| |||||||||| |||||||| || |||||||| |||||||    
T  28429325 ttgaagaattcttgatattatttttctaaagatatagcattgctc 28429281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 35676349 - 35676467
Alignment:
Q  141 atttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatg 240  Q
    |||||| |||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |||||||||||    
T  35676349 atttatttgttcacttcatatttttcagtcacacctccttgaattgtggcaaatagtgcattgtggttgactgctctttattcttaaagaattcttgatg 35676448  T
Q  241 ttatttttatagagatata 259  Q
    |||||||| ||||||||||    
T  35676449 ttatttttttagagatata 35676467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 29689277 - 29689407
Alignment:
Q  126 agttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattctt 225  Q
    |||||||||||||||||||||  ||||| ||||||||||| || || ||||||||||||| | ||||||||||||||||||||    |||||||||||||    
T  29689277 agttttaattgcatgatttattagttcacttcctatttttcagtcaaacctccttgaattatagcaaatagtgcattgtgatt---tgctctttattctt 29689373  T
Q  226 gaaaaattcttgatgttatttttatagagatata 259  Q
     |||||||||||||||||||||| ||||||||||    
T  29689374 aaaaaattcttgatgttatttttctagagatata 29689407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 128 - 268
Target Start/End: Original strand, 2752692 - 2752832
Alignment:
Q  128 ttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttga 227  Q
    ||||||||| ||||||||| | |||| ||| ||||||| || || | ||||||||||||||||||||||||||||||||||| | ||| ||| |||||||    
T  2752692 ttttaattgtatgatttatttattcacttcttatttttcagtcagatctccttgaattgtggcaaatagtgcattgtgattggctgctattttttcttga 2752791  T
Q  228 aaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    | ||||||| ||||||||||| |||| |||||  |||||||    
T  2752792 agaattcttaatgttatttttctagaaatatatcattgctc 2752832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 124 - 268
Target Start/End: Original strand, 16058427 - 16058572
Alignment:
Q  124 caagttttaattgcatgatttatatgttcatttcctattttttagccacac--ctccttgaattgtggcaaatagtgcattgtgattgaccgctctttat 221  Q
    ||||||||| ||||||||||||| | |||| ||| ||||||| ||||||||  |||||||||||||| ||||| || |||| | || |||  ||||||||    
T  16058427 caagttttatttgcatgatttatttattcacttcatatttttcagccacacaactccttgaattgtgacaaat-gttcattattatagactactctttat 16058525  T
Q  222 tcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||||| ||||||| ||||||||||| ||||||||||| |||||||    
T  16058526 tcttgaagaattcttaatgttatttttctagagatatagcattgctc 16058572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 159 - 260
Target Start/End: Original strand, 23454350 - 23454452
Alignment:
Q  159 tattttttagccacacctccttgaattgtggcaaat-agtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagata 257  Q
    ||||||| || | ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||| || ||||||||||| ||||||||    
T  23454350 tatttttcagtcgcacctccttgaattgtgtcaaattagtgcattgtgattgactgctctttattcttgaagaattttttatgttatttttctagagata 23454449  T
Q  258 tag 260  Q
    |||    
T  23454450 tag 23454452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 28716341 - 28716435
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgt 187  Q
    |||||| ||||||||||||||| ||| || ||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||| |||||||||    
T  28716341 tagcatcaagaatttttcaagacacaactggcaagttttaattgcattatttatttgttcacttcctatttttcagccacacctctttgaattgt 28716435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 28716437 - 28716538
Alignment:
Q  167 agccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgc 266  Q
    ||||||||||| ||||||||||||||||||||||||||||| | |  || |||||||||||| |||||||||||| |||||| ||||||||||  |||||    
T  28716437 agccacacctctttgaattgtggcaaatagtgcattgtgatcggctactatttattcttgaagaattcttgatgtcatttttctagagatataacattgc 28716536  T
Q  267 tc 268  Q
    ||    
T  28716537 tc 28716538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 40126532 - 40126658
Alignment:
Q  101 agaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgca 200  Q
    ||||||||| |||| ||||||  ||| ||||||||| ||||||||| |||||| ||||||||||| | | | | || ||| |||||||  ||||||||||    
T  40126532 agaattttttaagatacagctcacaaattttaattgtatgatttatttgttcacttcctatttttcaactatatcttcttaaattgtgataaatagtgca 40126631  T
Q  201 ttgtgattgaccgctctttattcttga 227  Q
    || ||| |||| |||||||||||||||    
T  40126632 ttatgaatgactgctctttattcttga 40126658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 268
Target Start/End: Original strand, 36690856 - 36691019
Alignment:
Q  104 atttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattg 203  Q
    ||||||||||| ||||||  ||| |||||||| | |||||||| |||||| ||||||  ||| |||||| | |||||||||||||||||||| || |||     
T  36690856 atttttcaagacacagctgacaaattttaattacttgatttatttgttcacttccta-ctttcagccacgcttccttgaattgtggcaaatactgtatta 36690954  T
Q  204 tgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    | ||||   | | |||||| ||||| |||| |||||||||| ||| ||||||||||  |||||||    
T  36690955 taattggatgttttttatttttgaagaatttttgatgttatatttttagagatataacattgctc 36691019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 41464944 - 41464911
Alignment:
Q  222 tcttgaaaaattcttgatgttatttttatagaga 255  Q
    ||||||||||||||||||||||||||| ||||||    
T  41464944 tcttgaaaaattcttgatgttatttttctagaga 41464911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 100 - 268
Target Start/End: Complemental strand, 36517682 - 36517514
Alignment:
Q  100 aagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgc 199  Q
    ||||||||||||| | |||| | |||||||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||||||||||||||||||    
T  36517682 aagaatttttcaaaacacagttggcaagttttaattgcatgatttatttgttcacttcctattttttattcacacctccttgaattgtggcaaatagtgc 36517583  T
Q  200 attgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| | |||| |||||| |||||||    
T  36517582 attgtgattgactgctctttattcttgaagaattcttgatgttatttgtctagatatatagcattgctc 36517514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 100 - 268
Target Start/End: Original strand, 521795 - 521963
Alignment:
Q  100 aagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgc 199  Q
    |||||||||| |||| |||| |  ||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  521795 aagaattttttaagacacagttgtcaagttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgc 521894  T
Q  200 attgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    |||||||||| | |||||||||||||||| ||||||||||||||||| | |||| |||||| |||||||    
T  521895 attgtgattggctgctctttattcttgaagaattcttgatgttatttatctagatatatagcattgctc 521963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 66 - 267
Target Start/End: Original strand, 50612871 - 50613072
Alignment:
Q  66 aaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttt 165  Q
    ||||||||||||||||||||        ||||| ||||||||||||| | ||||||  |||||||||||||||| |||||| |||||| ||  |||||||    
T  50612871 aaggaaaatgttatttctctataaaaacagcatcaagaatttttcaatacacagctgacaagttttaattgcataatttatttgttcactttatattttt 50612970  T
Q  166 tagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattg 265  Q
     || |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  50612971 cagtcacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagcattg 50613070  T
Q  266 ct 267  Q
    ||    
T  50613071 ct 50613072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 93 - 268
Target Start/End: Original strand, 38176413 - 38176588
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||||||||||||||||||| |||| | |||||||||||||||||| ||||| |||||| ||| ||||||| |||||||||||||||||||| |||||    
T  38176413 tagcattaagaatttttcaagacacagttggcaagttttaattgcatgttttatttgttcacttcatatttttcagccacacctccttgaattgaggcaa 38176512  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||||||||| ||||| | |||||||||||||||| ||||||||||| ||||||| ||||||||||  |||||||    
T  38176513 atagtgcattgcgattggctgctctttattcttgaagaattcttgatgatatttttctagagatataacattgctc 38176588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 1561286 - 1561445
Alignment:
Q  100 aagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgc 199  Q
    ||||||||||  ||| ||||||  ||||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  1561286 aagaattttttcagacacagctgacaagtttcaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgc 1561385  T
Q  200 attgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatata 259  Q
    ||||||||||   |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  1561386 attgtgattggttgctctttattcttgaagaattcttgatgttatttttctagagatata 1561445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 65 - 257
Target Start/End: Original strand, 23642975 - 23643167
Alignment:
Q  65 aaaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctatttt 164  Q
    ||||||||||| |||||||||       |||||| ||||||||||||||| ||||||  ||| |||||||| ||| |||||| |||||| ||||||||||    
T  23642975 aaaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagacacagctgacaaattttaattccataatttatttgttcacttcctatttt 23643074  T
Q  165 ttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagata 257  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||   | |||||||||||| ||||||||||||||||||| ||||||||    
T  23643075 ttagtcacacctccttgaattgtggcaaatagtgcattgtgattgactaatatttattcttgaagaattcttgatgttatttttctagagata 23643167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 70 - 268
Target Start/End: Complemental strand, 45166424 - 45166226
Alignment:
Q  70 aaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagc 169  Q
    ||||||||||||||||       |||||| |||||||||||||||  ||| | |||| ||||||||||||||||||| ||| || | ||||||||| |||    
T  45166424 aaaatgttatttctctagaaaaatagcatcaagaatttttcaagacgcagttggcaaattttaattgcatgatttatttgtccactccctatttttcagc 45166325  T
Q  170 cacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||| |||||||||||||||||||||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||| ||||||||||  |||||||    
T  45166324 cacgcctccttgaattgtggcaaatagtgcattgtgattggctgctctttattattgaagaattcttgatgttatttttctagagatataacattgctc 45166226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 31788508 - 31788305
Alignment:
Q  65 aaaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctatttt 164  Q
    |||||||||||||||||||||       || | | ||||||||||||||| |||  |  |||||||||| |||| ||||||| |||||| ||||||||||    
T  31788508 aaaggaaaatgttatttctctataaaaataacttcaagaatttttcaagacacaattgacaagttttaactgcaagatttatttgttcacttcctatttt 31788409  T
Q  165 ttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtatt 264  Q
    | |  |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||  |||    
T  31788408 tcaatcacacctccttgaattgtggtaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatatcatt 31788309  T
Q  265 gctc 268  Q
    ||||    
T  31788308 gctc 31788305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 20912342 - 20912167
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| |||||||||| |||| | ||||   |||||||||||||||||||||| |||||| ||||||||||| || ||||||||||| |||| || |||    
T  20912342 tagcatcaagaatttttaaagacatagctgataagttttaattgcatgatttatttgttcacttcctatttttcagtcacacctccttaaattatgacaa 20912243  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    |||||||||||| |||||| |||||||||||||||| ||||||||||||||||||| || |||||| | |||||||    
T  20912242 atagtgcattgttattgactgctctttattcttgaagaattcttgatgttatttttttaaagatattggattgctc 20912167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 128 - 268
Target Start/End: Original strand, 34624535 - 34624674
Alignment:
Q  128 ttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttga 227  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||||| ||||  |||||||| ||||||||||||||||||| | |||||||||||||||    
T  34624535 ttttaattgcatgatttatttgttcacttcctatttttcagccacacttcctcaaattgtggtaaatagtgcattgtgattggctgctctttattcttga 34624634  T
Q  228 aaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    | ||||||| ||||||||||| ||||||||||| |||||||    
T  34624635 agaattctt-atgttatttttctagagatatagcattgctc 34624674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 66 - 265
Target Start/End: Complemental strand, 39145453 - 39145254
Alignment:
Q  66 aaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttt 165  Q
    |||||||||| |||||||||       |||||| |||||||| |||||| |||| |  ||||||||||||| ||||||| | ||||||||||||||||||    
T  39145453 aaggaaaatgctatttctctagaaaaatagcatcaagaatttgtcaagacacagttgtcaagttttaattgtatgatttctttgttcatttcctattttt 39145354  T
Q  166 tagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattg 265  Q
     || || ||||| ||||||||| |||||||||||||||| |||| | ||| ||||||||| || |||||||||| |||||||| ||||||||||| ||||    
T  39145353 cagtcatacctcattgaattgtagcaaatagtgcattgtaattggctgctttttattcttaaagaattcttgatattatttttctagagatatagcattg 39145254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 95 - 259
Target Start/End: Complemental strand, 52546915 - 52546751
Alignment:
Q  95 gcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaat 194  Q
    |||| ||||||||| ||||| ||| ||  |||||||||||||||| |||||| |||||||||||||||||| |  |||||||| |||||||||| |||||    
T  52546915 gcatcaagaattttccaagacacaccttacaagttttaattgcataatttatttgttcatttcctatttttcactcacacctcattgaattgtgacaaat 52546816  T
Q  195 agtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatata 259  Q
    ||  ||||||||||| | |||||||||||||||| |||| |||||||||||||| || |||||||    
T  52546815 agcacattgtgattggctgctctttattcttgaagaatttttgatgttatttttctaaagatata 52546751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 128 - 272
Target Start/End: Original strand, 51297084 - 51297227
Alignment:
Q  128 ttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttga 227  Q
    ||||||||||||||||||| |||||| || |||||||| || || ||||  ||||||||||||||||||||||||||| ||| | | ||||||| ||||     
T  51297084 ttttaattgcatgatttatttgttcactttctatttttcagtcatacctttttgaattgtggcaaatagtgcattgtggttggctgttctttatgcttg- 51297182  T
Q  228 aaaattcttgatgttatttttatagagatatagtattgctccaat 272  Q
    || | |||||||||||||||| ||||||||||  ||| |||||||    
T  51297183 aagactcttgatgttatttttctagagatataacattactccaat 51297227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 22650442 - 22650551
Alignment:
Q  116 acagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgct 215  Q
    |||||| |||||||||||||||||||||||| |||||| ||  || |||| |||||||||||||| ||||||| || ||| ||  |||| |||||| | |    
T  22650442 acagctcgcaagttttaattgcatgatttatttgttcactttttacttttcagccacacctccttaaattgtgtcagataatgatttgtaattgactgtt 22650541  T
Q  216 ctttattctt 225  Q
    ||||||||||    
T  22650542 ctttattctt 22650551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 43203318 - 43203248
Alignment:
Q  198 gcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    |||||||||||| | |||||||||| ||||| ||||||||||||||||||| |||| |||||| |||||||    
T  43203318 gcattgtgattggctgctctttatttttgaagaattcttgatgttatttttttagaaatatagcattgctc 43203248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 9496674 - 9496570
Alignment:
Q  124 caagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattc 223  Q
    |||| ||||| |||||||||||| |||||| | ||||||||| ||| ||||| |  || ||||||||||| |||| |||||||||| |  ||||||||||    
T  9496674 caagctttaactgcatgatttatttgttcactccctatttttcagcaacaccactgtgtattgtggcaaacagtgaattgtgattggctactctttattc 9496575  T
Q  224 ttgaa 228  Q
    |||||    
T  9496574 ttgaa 9496570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 544687 - 544634
Alignment:
Q  215 tctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||| |||||||    
T  544687 tctttattcttgaagaattcttggtgttatttttctagagatataggattgctc 544634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 38169330 - 38169408
Alignment:
Q  148 tgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaa 228  Q
    |||||| |||||||||||||| |||||||||||| |||||| |||  |||| ||||||||||||  ||||||||| |||||    
T  38169330 tgttcacttcctattttttagtcacacctccttgtattgtgacaa--agtggattgtgattgactactctttattattgaa 38169408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 29011343 - 29011380
Alignment:
Q  173 acctccttgaattgtggcaaatagtgcattgtgattga 210  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  29011343 acctccttgaattgtggtaaatagtacattgtgattga 29011380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 31788459 - 31788492
Alignment:
Q  222 tcttgaaaaattcttgatgttatttttatagaga 255  Q
    ||||||||||||||||| ||||||||||||||||    
T  31788459 tcttgaaaaattcttgaagttatttttatagaga 31788492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 8e-56; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 4391869 - 4392035
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||||| |||||| |||||| ||||||||||| ||||||| ||||||||||||||||||    
T  4391869 tagcatcaagaatttttcaagacacagctggcaagttttaattgcataatttatttgttcacttcctatttttcagccacagctccttgaattgtggcaa 4391968  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatata 259  Q
    | |||||||||| |||| | |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  4391969 acagtgcattgtaattggctgctctttattcttgaagaattcttgatgttatttttctagagatata 4392035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 32891349 - 32891174
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| || |||||||||||| |||| |  ||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||    
T  32891349 tagcatcaacaatttttcaagacacagttgacaaattttaattgcatgatttatttgttcacttcctatcttttagccacacctccttgaattgtggcaa 32891250  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||||||||||||||| | ||| |||||||||||| ||||||||||||||||||| ||||||||||  |||||||    
T  32891249 atagtgcattgtgattggctgctttttattcttgaagaattcttgatgttatttttctagagatataacattgctc 32891174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 37093935 - 37094101
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| ||||||||||||||| |||| |  |||||||||||||||| |||||| |||||| ||||||||||| || |||||||||||||||||| ||||    
T  37093935 tagcatcaagaatttttcaagacacagttgacaagttttaattgcataatttatttgttcacttcctatttttcagtcacacctccttgaattgttgcaa 37094034  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatata 259  Q
    ||||| || |||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||    
T  37094035 atagtacaatgtgattgactgctctttattcttgaagaattgttgatgttatttttctagagatata 37094101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 96 - 268
Target Start/End: Complemental strand, 228195 - 228023
Alignment:
Q  96 cattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaata 195  Q
    |||||| | |||||||||| ||| ||  ||||||||||||||||||| ||| |||||| || ||| |||| || |||||||||||||||||||| |||||    
T  228195 cattaaaattttttcaagacacaacttacaagttttaattgcatgatatatttgttcactttctacttttcagtcacacctccttgaattgtggtaaata 228096  T
Q  196 gtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    |||||||||||||||  | |||||||||||||||||||||||||||||||||| ||||||||||  |||||||    
T  228095 gtgcattgtgattgattgttctttattcttgaaaaattcttgatgttatttttctagagatatatcattgctc 228023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 68 - 269
Target Start/End: Complemental strand, 34286793 - 34286593
Alignment:
Q  68 ggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctatttttta 167  Q
    ||||||||||||||||||       |||||| || | |||||||||| ||| ||  ||| ||||||||||||||||||| |||||||||||||||||| |    
T  34286793 ggaaaatgttatttctctagaaaaatagcatcaaaattttttcaagacacaactgacaaattttaattgcatgatttatttgttcatttcctatttttca 34286694  T
Q  168 gccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgct 267  Q
    ||||||||| | | |||||||||||||||||||| ||||||| | ||| |||||||||||| |||| |||||||||||||| |||||||||| |||||||    
T  34286693 gccacaccttcattaattgtggcaaatagtgcatcgtgattggctgct-tttattcttgaataattattgatgttatttttttagagatataatattgct 34286595  T
Q  268 cc 269  Q
    ||    
T  34286594 cc 34286593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 66 - 259
Target Start/End: Complemental strand, 8692710 - 8692517
Alignment:
Q  66 aaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttt 165  Q
    ||||||||||||||||||||       |||||| |||||| |||||||| ||||||  ||| ||||||||||||||||||| | |||| || ||||||||    
T  8692710 aaggaaaatgttatttctctaaaaaaatagcatcaagaatctttcaagacacagctgacaaattttaattgcatgatttatttattcactttctattttt 8692611  T
Q  166 tagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatata 259  Q
      ||||||| |||||||||||||||||||||| |||| ||||||   ||| |||||||||||| ||||||||||||||||||| ||||||||||    
T  8692610 ctgccacacttccttgaattgtggcaaatagtacattatgattggatgctatttattcttgaagaattcttgatgttatttttctagagatata 8692517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 3456896 - 3456773
Alignment:
Q  124 caagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattc 223  Q
    ||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  3456896 caagttttaattgcatgatttatttgttcacttcctatttttcagtcacacctccttgaattgtggcaaatagtgcattgtgagtgactgctctttattc 3456797  T
Q  224 ttgaaaaattcttgatgttatttt 247  Q
    ||||| ||||| | ||||||||||    
T  3456796 ttgaagaattcgtaatgttatttt 3456773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 11739275 - 11739409
Alignment:
Q  125 aagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattct 224  Q
    ||||||||||||||| |||||| ||||||  |||||||||| ||||||||||||||||||||||||||| |||||||| |||||  | ||| ||||||||    
T  11739275 aagttttaattgcataatttatttgttcacctcctatttttcagccacacctccttgaattgtggcaaacagtgcattatgattacctgctttttattct 11739374  T
Q  225 tgaaaaattcttgatgttatttttatagagatata 259  Q
    |||| ||||||||||||||||||| || |||||||    
T  11739375 tgaagaattcttgatgttatttttctaaagatata 11739409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 124 - 260
Target Start/End: Complemental strand, 29223607 - 29223473
Alignment:
Q  124 caagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattc 223  Q
    ||||||||||||||||||||||| ||| || ||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||| |||| |||||     
T  29223607 caagttttaattgcatgatttatttgtacacttcttatttttcagtcacacctccttgaattgtggcaaatagtgcattgtggttgactgctc-ttatt- 29223510  T
Q  224 ttgaaaaattcttgatgttatttttatagagatatag 260  Q
    ||||| |||||||||| |||||||| || ||||||||    
T  29223509 ttgaagaattcttgatattatttttctaaagatatag 29223473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 125 - 248
Target Start/End: Original strand, 38614236 - 38614362
Alignment:
Q  125 aagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattct 224  Q
    |||||||||||||||||||||| |||| | ||||||||||| ||||||| || ||||||||||||||| ||||||||||||||||  |||||||||||||    
T  38614236 aagttttaattgcatgatttatttgtttacttcctatttttcagccacatcttcttgaattgtggcaattagtgcattgtgattgggcgctctttattct 38614335  T
Q  225 t---gaaaaattcttgatgttattttt 248  Q
    |   ||| |||||||||||||||||||    
T  38614336 tgaagaagaattcttgatgttattttt 38614362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 128 - 259
Target Start/End: Original strand, 35672369 - 35672499
Alignment:
Q  128 ttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttga 227  Q
    ||||||||||||||||||| |||||| |||||||| |||| | |||  ||||| ||||| |  ||||||||||||||||||||| |||||||||||||||    
T  35672369 ttttaattgcatgatttatttgttcacttcctattgttta-caacatttccttaaattgcgataaatagtgcattgtgattgactgctctttattcttga 35672467  T
Q  228 aaaattcttgatgttatttttatagagatata 259  Q
    ||||||||| ||||||||||| |||| |||||    
T  35672468 aaaattcttaatgttatttttctagaaatata 35672499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 95 - 260
Target Start/End: Complemental strand, 28434374 - 28434209
Alignment:
Q  95 gcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaat 194  Q
    |||| ||||||||||  ||| |||| |||| ||||||||||||||||||||| | ||||||| |||||||  || |||| || ||| |||||||| ||||    
T  28434374 gcatcaagaatttttttagatacagttagcgagttttaattgcatgatttatttattcattttctattttacagtcacatcttcttaaattgtggtaaat 28434275  T
Q  195 agtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatag 260  Q
    |||||||||| |||| | |||||||||| || || ||||||  ||||||||||| |||||||||||    
T  28434274 agtgcattgtaattggctgctctttatttttaaagaattctcaatgttatttttctagagatatag 28434209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 155 - 268
Target Start/End: Original strand, 41326534 - 41326647
Alignment:
Q  155 ttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagag 254  Q
    ||||||||||| |||||||||||||||||||||| |||||||  ||||||||||| | |||||||||||||||| |  || ||||||||||||| |||||    
T  41326534 ttcctatttttcagccacacctccttgaattgtgtcaaatagcacattgtgattggctgctctttattcttgaagagatcgtgatgttatttttctagag 41326633  T
Q  255 atatagtattgctc 268  Q
    |||||| |||||||    
T  41326634 atatagcattgctc 41326647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 40926010 - 40925912
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggca 191  Q
    |||||| ||||||||||||||| ||| ||  ||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||    
T  40926010 tagcatcaagaatttttcaagacacatctgacaagttttaattgtatgatttatttgttcacttcctatttttcagccacacctctttgaattgtggca 40925912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 6614301 - 6614366
Alignment:
Q  124 caagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtgg 189  Q
    ||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||||||||||    
T  6614301 caagttttaattgcatgatttatttgttcacttcctatttttcaggcacacctccttgaattgtgg 6614366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 5481527 - 5481358
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| |||||||||| |||| |||| | | || |||||| |||||||||||| |||||| ||  ||||||| ||||||| |||  |||||||||||||    
T  5481527 tagcatcaagaattttttaagacacagttggtaaattttaactgcatgatttatttgttcactttttatttttcagccacatctctatgaattgtggcaa 5481428  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||| |||||||||| ||       ||||||||| || |||| ||||| |||||||| ||| ||||||| |||||||    
T  5481427 ataatgcattgtgaatg------gtttattcttaaagaatttttgatattatttttctagtgatatagcattgctc 5481358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 31644715 - 31644657
Alignment:
Q  191 aaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttattttta 249  Q
    ||||||||||||||||||| | |||||||||||||||| |||| |||||||||||||||    
T  31644715 aaatagtgcattgtgattggctgctctttattcttgaagaattattgatgttattttta 31644657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 16516963 - 16517072
Alignment:
Q  116 acagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgct 215  Q
    |||||| ||||||||||||| |||||||||| |||||| |  ||||| || ||| ||| |||| || ||||| ||||  |||| ||| |||||||| |||    
T  16516963 acagctggcaagttttaatttcatgatttatttgttcactctctattattcagcaacatctccgtgtattgttgcaagcagtgaattatgattgactgct 16517062  T
Q  216 ctttattctt 225  Q
    ||||||||||    
T  16517063 ctttattctt 16517072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 42148956 - 42148899
Alignment:
Q  170 cacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttga 227  Q
    |||||||||||||||| || |||||||| ||||||||||||  ||| |||||||||||    
T  42148956 cacacctccttgaattatgtcaaatagtacattgtgattgagtgctatttattcttga 42148899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 31644769 - 31644721
Alignment:
Q  125 aagttttaattgcatgatttatatgttcatttcctattttttagccaca 173  Q
    |||||||||||||||| ||||| |||||| ||||||||||| | |||||    
T  31644769 aagttttaattgcatggtttatttgttcacttcctatttttcaaccaca 31644721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 102 - 260
Target Start/End: Original strand, 7646807 - 7646965
Alignment:
Q  102 gaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcat 201  Q
    ||||||||||||| ||| || |||||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  7646807 gaatttttcaagacacatctggcaagttttaattgcatgatttatttgttcatttcctatttttcagtcacacatccttgaattgtggcaaatagtgcat 7646906  T
Q  202 tgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatag 260  Q
    |||||||| | |||||||||| || || ||||||||||||||||||| |||||||||||    
T  7646907 tgtgattggctgctctttatttttaaagaattcttgatgttatttttctagagatatag 7646965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 25935683 - 25935517
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| ||||||||||||||| |||||| ||||||||||||| ||||||||||   |||| || |||||||| |||||||||||||| ||||||| |||    
T  25935683 tagcatcaagaatttttcaagacacagctggcaagttttaattacatgatttattctttcactttctatttttcagccacacctccttaaattgtgacaa 25935584  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatata 259  Q
    ||||| |||| |||||    |||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  25935583 atagtacattatgattagatgctctttattcttgaataattcttaatgttatttttctagagatata 25935517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 132 - 248
Target Start/End: Original strand, 12607123 - 12607239
Alignment:
Q  132 aattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaa 231  Q
    ||||||||||||||| |||||| || |||||||| || ||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||    
T  12607123 aattgcatgatttatttgttcactttctatttttcagtcacacctccttaaattgtggcaaatagtgcactgtgattgactgctctttattcttgaagaa 12607222  T
Q  232 ttcttgatgttattttt 248  Q
    |||||||| || |||||    
T  12607223 ttcttgatttttttttt 12607239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 29487541 - 29487671
Alignment:
Q  95 gcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaat 194  Q
    |||| ||||||||||| ||| |||| | | |||| || |||||||||||||| |||||| | ||||||||| ||||||||||| || |||||||||||||    
T  29487541 gcatcaagaatttttccagacacagttggtaagtgttgattgcatgatttatttgttcactccctatttttcagccacacctcatttaattgtggcaaat 29487640  T
Q  195 agtgcattgtgattgaccgctctttattctt 225  Q
    |||||| ||||||||||  ||||||||||||    
T  29487641 agtgcaatgtgattgactactctttattctt 29487671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 17366929 - 17366850
Alignment:
Q  189 gcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    |||||||||||| |||||||  | | |||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  17366929 gcaaatagtgcagtgtgattagctgttctttattcttgaaaaattcttaatgttgtttttctagagatatagcattgctc 17366850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 29637081 - 29636999
Alignment:
Q  142 tttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattct 224  Q
    ||||| |||||| || |||||||| |||   ||||||||| |||||||||||||||   ||||||||||| ||||||||||||    
T  29637081 tttatttgttcactttctatttttcagctttacctccttgtattgtggcaaatagttagttgtgattgactgctctttattct 29636999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 8e-50; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 124 - 268
Target Start/End: Complemental strand, 4851877 - 4851733
Alignment:
Q  124 caagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattc 223  Q
    ||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||||| |||||||| |||||||||||| |||||||| |||||||||||    
T  4851877 caagttttaattgcatgatttatttgtttatttcctatttttcagccacacttccttaaattgtggaaaatagtgcattatgattgactgctctttattc 4851778  T
Q  224 ttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    || |||||||||||||||||||||| ||||||||||| |||||||    
T  4851777 ttaaaaaattcttgatgttatttttctagagatatagcattgctc 4851733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 41322704 - 41322529
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| ||||||||||||||| | || |||||||||||||||||||||||||  |||| | |||||||||||   ||||||||||||||||| |  |||    
T  41322704 tagcatcaagaatttttcaagacatagttagcaagttttaattgcatgatttaattgttaacttcctatttttctaccacacctccttgaattttcacaa 41322605  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| || |||||||| |||||||    
T  41322604 atagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttaaagatatagcattgctc 41322529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 66 - 259
Target Start/End: Complemental strand, 29314201 - 29314008
Alignment:
Q  66 aaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttt 165  Q
    |||||||||| |||||||||       ||| || ||||||||||||||| |||| | | ||||||||||||||| |||||| ||| || || ||||||||    
T  29314201 aaggaaaatgctatttctctaaaaaaatagtatcaagaatttttcaagacacagttggtaagttttaattgcattatttatttgtccactttctattttt 29314102  T
Q  166 tagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatata 259  Q
     || ||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| || ||||||||||||||||||| ||||||||||    
T  29314101 cagtcacacctccttaaattgtggcaaatagtgcattgtgattgacttctctttattcttaaacaattcttgatgttatttttctagagatata 29314008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 93 - 268
Target Start/End: Original strand, 15561938 - 15562113
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| ||||||||||||||| |||| | |||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  15561938 tagcatcaagaatttttcaagatacagttggcaagttttaattgtatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaa 15562037  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||| ||||||  ||||||| | | ||||||||| |||  || |||||||||||||| | ||||||||| |||||||    
T  15562038 ataatgcattacgattgactgttatttattcttaaaatttttttgatgttatttttcttgagatatagaattgctc 15562113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 100 - 246
Target Start/End: Original strand, 36473080 - 36473226
Alignment:
Q  100 aagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgc 199  Q
    ||||||||||||||| |||  | | |||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||| |||||||||     
T  36473080 aagaatttttcaagacacaattggtaagttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttaaattgtgtcaaatagtgt 36473179  T
Q  200 attgtgattgaccgctctttattcttgaaaaattcttgatgttattt 246  Q
    | |||||||||| |||||||||||||||| |||||||||||||||||    
T  36473180 actgtgattgactgctctttattcttgaagaattcttgatgttattt 36473226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 125 - 260
Target Start/End: Complemental strand, 34392251 - 34392116
Alignment:
Q  125 aagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattct 224  Q
    |||||||||||||||||||||| |||||| ||   |||||| |||||||||| ||| |||||||||||||||| ||||||||||||  ||||||||||||    
T  34392251 aagttttaattgcatgatttatttgttcacttttcatttttcagccacaccttcttaaattgtggcaaatagtacattgtgattgagtgctctttattct 34392152  T
Q  225 tgaaaaattcttgatgttatttttatagagatatag 260  Q
    |||||||||||||||||||||||| |||||||||||    
T  34392151 tgaaaaattcttgatgttatttttttagagatatag 34392116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 105 - 258
Target Start/End: Complemental strand, 39112811 - 39112658
Alignment:
Q  105 tttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgt 204  Q
    |||||||||| |||  | |||| ||||||||| ||||||||| |||||| || |||||||| |||| |||||||||||||| ||||||||||||||||||    
T  39112811 tttttcaagacacaattggcaaattttaattggatgatttatttgttcactttctatttttcagccgcacctccttgaattatggcaaatagtgcattgt 39112712  T
Q  205 gattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatat 258  Q
    |||||   |||||||||| ||||| ||||||||||||||||||| |||||||||    
T  39112711 gattggttgctctttatttttgaagaattcttgatgttatttttctagagatat 39112658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 132 - 268
Target Start/End: Complemental strand, 8551625 - 8551489
Alignment:
Q  132 aattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaa 231  Q
    ||||||||||||||| ||||||||| |||||||||| ||||| |||||| |||||||||||| | |||||||||||||   | |||||||||| ||| ||    
T  8551625 aattgcatgatttatttgttcattttctattttttaaccacatctcctttaattgtggcaaacaatgcattgtgattggttgttctttattctcgaagaa 8551526  T
Q  232 ttcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||| ||||||||||| ||||||||||| |||||||    
T  8551525 ttcttaatgttatttttttagagatatagcattgctc 8551489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 2001850 - 2001679
Alignment:
Q  65 aaaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctatttt 164  Q
    |||||||||||||||||||||       |||||| ||   |||||||||| ||||||  |||||||||||| |||||||||| |||||| |  |||||||    
T  2001850 aaaggaaaatgttatttctctagaaaaatagcatcaaatttttttcaagacacagctgccaagttttaattacatgatttatttgttcactatctatttt 2001751  T
Q  165 ttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttg 237  Q
      |||||||||||||| ||||||||||||| ||| ||| |||||||| |||||||||||||||| ||||||||    
T  2001750 ccagccacacctccttaaattgtggcaaatcgtgtatt-tgattgactgctctttattcttgaagaattcttg 2001679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 100 - 248
Target Start/End: Original strand, 11653742 - 11653893
Alignment:
Q  100 aagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgc 199  Q
    |||||||||| |||| || |||  |||||||||||| |||||||||| |||||| || || ||||| |||||||| |||||||||||||||||||||| |    
T  11653742 aagaattttttaagacacggctgacaagttttaattacatgatttatttgttcacttact-tttttaagccacacatccttgaattgtggcaaatagtac 11653840  T
Q  200 att----gtgattgaccgctctttattcttgaaaaattcttgatgttattttt 248  Q
    |||     |||||||| |||||||||||||||| |||||||||||||||||||    
T  11653841 attatgattgattgactgctctttattcttgaagaattcttgatgttattttt 11653893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 124 - 259
Target Start/End: Complemental strand, 1005733 - 1005598
Alignment:
Q  124 caagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattc 223  Q
    |||||||||||||||| |||||| |||||| ||||||||||| || |||||||| || ||||||| ||||| ||||||| | |||||   ||||||||||    
T  1005733 caagttttaattgcataatttatttgttcacttcctatttttcagtcacacctctttaaattgtgtcaaatggtgcattataattgattactctttattc 1005634  T
Q  224 ttgaaaaattcttgatgttatttttatagagatata 259  Q
    || || |||| || || |||||||| ||||||||||    
T  1005633 tttaagaatttttaatattatttttctagagatata 1005598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 11643428 - 11643324
Alignment:
Q  123 gcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttatt 222  Q
    |||| ||||||||| ||||||||| |||||| ||| ||||||| | | |||| | ||| |||||||| ||||||||||||||||||||| ||||||||||    
T  11643428 gcaaattttaattgtatgatttatttgttcacttcgtatttttcaactacactttcttaaattgtggtaaatagtgcattgtgattgactgctctttatt 11643329  T
Q  223 cttga 227  Q
    |||||    
T  11643328 cttga 11643324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 37919603 - 37919709
Alignment:
Q  133 attgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaat 232  Q
    |||||||||||||| |||||| || |||||||| |  |||| |||||| ||||||| |||||| ||||||||||||||  | | ||||||||| ||||||    
T  37919603 attgcatgatttatttgttcacttactatttttcactcacatctccttaaattgtgacaaataatgcattgtgattgattgttatttattcttaaaaaat 37919702  T
Q  233 tcttgat 239  Q
    |||||||    
T  37919703 tcttgat 37919709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 4794241 - 4794161
Alignment:
Q  148 tgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaa 228  Q
    |||||| |||||||||||| |||| |||||| |  ||||||||||||||||||||||||||| | ||| ||||||||||||    
T  4794241 tgttcacttcctattttttggccaaacctccatatattgtggcaaatagtgcattgtgattggctgctatttattcttgaa 4794161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 33889049 - 33888946
Alignment:
Q  67 aggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctatttttt 166  Q
    ||||||||| |||||||||       |||||| ||||||||||||||||||| ||  |||||||||||||||| |||||| |||||| | |||||||||     
T  33889049 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaagaaacaactgacaagttttaattgcataatttatttgttcactccctatttttc 33888950  T
Q  167 agcc 170  Q
    ||||    
T  33888949 agcc 33888946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 3607115 - 3607036
Alignment:
Q  189 gcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||||| | || ||||||||||  || |||||||||||||  || |||||||||||||| ||||||||||| |||||||    
T  3607115 gcaaatactacactgtgattgactactttttattcttgaaatttttttgatgttatttttctagagatatagcattgctc 3607036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 5549072 - 5548975
Alignment:
Q  131 taattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaa 228  Q
    |||||||||||||||| |||||| | |||||| || ||  ||||| || || ||| |||||| || || ||| |||||||| ||||||||||||||||    
T  5549072 taattgcatgatttatttgttcactccctattgttcagggacaccaccgtgtattatggcaagtactgaattatgattgactgctctttattcttgaa 5548975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 1196545 - 1196507
Alignment:
Q  230 aattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  1196545 aattcttgatgttatttttctagagatatagcattgctc 1196507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 36473094 - 36473056
Alignment:
Q  222 tcttgaaaaattcttgatgttatttttatagagatatag 260  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  36473094 tcttgaaaaattcttgatgttatttttctagagaaatag 36473056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 93 - 265
Target Start/End: Original strand, 27425777 - 27425949
Alignment:
Q  93 tagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaa 192  Q
    |||||| || |||||||||||| |||| | |||||||||||||||||||||||| |||||| ||||||||||| | ||||| ||||||||||||||||||    
T  27425777 tagcatcaacaatttttcaagacacagttggcaagttttaattgcatgatttatttgttcacttcctatttttcaaccacaactccttgaattgtggcaa 27425876  T
Q  193 atagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattg 265  Q
    ||| ||||||||||||||| | ||||||||||| || ||||||||||||||||||| || |||||||| ||||    
T  27425877 ataatgcattgtgattgactgttctttattctttaagaattcttgatgttatttttctaaagatatagcattg 27425949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 100 - 268
Target Start/End: Original strand, 23991981 - 23992149
Alignment:
Q  100 aagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgc 199  Q
    ||||||||||||||| ||| ||  ||||||||||||||||||| | | |||||| || |||||||| |||||||||||||||||||||||||||||||||    
T  23991981 aagaatttttcaagacacaactgacaagttttaattgcatgatatttttgttcactttctatttttcagccacacctccttgaattgtggcaaatagtgc 23992080  T
Q  200 attgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    |||||||| | | |||||||||||||||| ||||||||||||||| ||| ||||||||||  |||||||    
T  23992081 attgtgataggctgctctttattcttgaagaattcttgatgttatatttgtagagatataacattgctc 23992149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 125 - 260
Target Start/End: Complemental strand, 22327001 - 22326866
Alignment:
Q  125 aagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattct 224  Q
    |||||||||||||||||||||| |||||| || |||||||| || ||||||||| |||||||||||||||||| ||||||||||||| ||||||| ||||    
T  22327001 aagttttaattgcatgatttatttgttcactttctatttttcagtcacacctccctgaattgtggcaaatagtacattgtgattgacggctctttcttct 22326902  T
Q  225 tgaaaaattcttgatgttatttttatagagatatag 260  Q
    |||| ||||||||||||||||||| || ||||||||    
T  22326901 tgaagaattcttgatgttatttttctaaagatatag 22326866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 124 - 268
Target Start/End: Complemental strand, 17611986 - 17611842
Alignment:
Q  124 caagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattc 223  Q
    ||||||||||||| ||||||||| | |||| ||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||   | |||||||||    
T  17611986 caagttttaattgtatgatttatttattcacttcctattttttagccacatctccttgaattgtggcaaataattcattatgattggttgttctttattc 17611887  T
Q  224 ttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||| ||||||||||||||||||| ||| ||||||| |||||||    
T  17611886 ttgaagaattcttgatgttatttttctagcgatatagcattgctc 17611842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 103 - 268
Target Start/End: Complemental strand, 8307687 - 8307525
Alignment:
Q  103 aatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcatt 202  Q
    |||||||||||| ||| || |||| |||||| |||||||||||| |||||| ||||||||||| ||||||||||   ||||||||||| |||||||||||    
T  8307687 aatttttcaagacacaactggcaaattttaactgcatgatttatttgttcacttcctatttttgagccacacct---tgaattgtggctaatagtgcatt 8307591  T
Q  203 gtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
     ||||||||   ||||||||||| |||||||||||||||||||||| |||| ||| || |||||||    
T  8307590 atgattgactcgtctttattcttaaaaaattcttgatgttatttttctagatatacagcattgctc 8307525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 42195580 - 42195418
Alignment:
Q  65 aaaggaaaatgttatttctctnnnnnnntagcattaagaatttttcaagaaacagctagcaagttttaattgcatgatttatatgttcatttcctatttt 164  Q
    |||||||||||||||||||||       || ||| |||||||||| |||| ||| |||  |||||||||||||||||||||| |||||| | | ||||||    
T  42195580 aaaggaaaatgttatttctctagaaaaataacatcaagaattttttaagatacaactaaaaagttttaattgcatgatttatttgttcactccttatttt 42195481  T
Q  165 ttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttga 227  Q
    | || |||||||||||||||||||| ||||||||||||| |||| || |||||| || |||||    
T  42195480 tcagacacacctccttgaattgtggtaaatagtgcattgagattaactgctcttaatccttga 42195418  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 41405803 - 41405873
Alignment:
Q  158 ctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaa 228  Q
    |||||||| | ||| ||||||||| ||||||||||||||||||||||||  |||  |||||||||||||||    
T  41405803 ctatttttcaaccatacctccttgtattgtggcaaatagtgcattgtgaccgactcctctttattcttgaa 41405873  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 25686478 - 25686406
Alignment:
Q  155 ttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttga 227  Q
    ||||||||||  |||||||||||||| |||||||| ||||||| |||| |||||||  | |||||||||||||    
T  25686478 ttcctattttccagccacacctccttaaattgtggtaaatagtacattatgattgattgttctttattcttga 25686406  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 19479508 - 19479441
Alignment:
Q  201 ttgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatagtattgctc 268  Q
    ||||||||||   ||||||||| ||||| |||| |||||||||||||| ||||||||||| |||||||    
T  19479508 ttgtgattgattactctttatttttgaagaatttttgatgttatttttctagagatatagcattgctc 19479441  T

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Target: scaffold0002 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 124 - 259
Target Start/End: Complemental strand, 492810 - 492675
Alignment:
Q  124 caagttttaattgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattc 223  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| | |||||||||||    
T  492810 caagttttaattgcataatttatttgttcatttcctatttttcagccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattc 492711  T
Q  224 ttgaaaaattcttgatgttatttttatagagatata 259  Q
    ||||| ||||||||||||||||||| ||||||||||    
T  492710 ttgaagaattcttgatgttatttttctagagatata 492675  T

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Target: scaffold0132 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 161 - 267
Target Start/End: Complemental strand, 642 - 537
Alignment:
Q  161 ttttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatag 260  Q
    ||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| || ||||||||    
T  642 tttttcagccacacctccttaaattgtg-caaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttatagatatag 544  T
Q  261 tattgct 267  Q
     ||||||    
T  543 gattgct 537  T

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Target: scaffold0132; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 161 - 267
Target Start/End: Complemental strand, 8602 - 8497
Alignment:
Q  161 ttttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattcttgaaaaattcttgatgttatttttatagagatatag 260  Q
    ||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| || ||||||||    
T  8602 tttttcagccacacctccttaaattgtg-caaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttatagatatag 8504  T
Q  261 tattgct 267  Q
     ||||||    
T  8503 gattgct 8497  T

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Target: scaffold0067 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 19328 - 19417
Alignment:
Q  133 attgcatgatttatatgttcatttcctattttttagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgctctttattc 223  Q
    ||||||| ||||| ||||||| |||||||||||  || |||||||| || |||||||||| ||  | |||||||||||| |||||||||||    
T  19328 attgcataattta-atgttcacttcctatttttctgctacacctccgtgtattgtggcaagtaacgtattgtgattgacagctctttattc 19417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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