View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3332_high_5 (Length: 348)
Name: NF3332_high_5
Description: NF3332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3332_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 35197876 - 35198201
Alignment:
| Q |
8 |
cgaagaatatacccaaagtttcacgcatgcatcaacgatgactggtacaaagcaaacaaaaatagtaatggcggcctgatcaacttcaagcccataatgc |
107 |
Q |
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| T |
35197876 |
cgaagaaaatacccaaagtttcacgcatgcatcaacgatgactggtacaaagcaaacaaaaatagtaatggcggcctgatcaacttcaagcccataatgc |
35197975 |
T |
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| Q |
108 |
tcgacaattatctctatcagagtttgccaaccagattcagaatgatacctgtaggcgtcccaatatgcaacaaaagagtaaacagctcgaaaagagaagc |
207 |
Q |
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| T |
35197976 |
tcgacaattatctctatcagagtttgccaaccagattcagaatgatacctgtaggcgtcccaatatgcaacaaaagagtaaacaactcgaaaagagaagc |
35198075 |
T |
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| Q |
208 |
taaaataaaataggtttattaaatcaagtaggaaatcctaccaaaggttgctaatagaaaagagatgaaaacagcaacaattatcatatatgaaatgtat |
307 |
Q |
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| T |
35198076 |
taaaataaaataggtttattaaatcaagtaggaaatcctaccaaaggttgctaatagaaatgagatgaaaacagcaacaattatcatatatgaaatgtat |
35198175 |
T |
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| Q |
308 |
taaatagtaaccagatgttgtgtatg |
333 |
Q |
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| T |
35198176 |
taaatagtaaccagatgttgtgtatg |
35198201 |
T |
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