View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3332_high_6 (Length: 302)

Name: NF3332_high_6
Description: NF3332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3332_high_6
NF3332_high_6
[»] chr3 (3 HSPs)
chr3 (153-287)||(20041334-20041468)
chr3 (169-260)||(20041568-20041659)
chr3 (23-74)||(20041263-20041311)
[»] chr1 (1 HSPs)
chr1 (90-139)||(25281359-25281408)
[»] chr4 (2 HSPs)
chr4 (192-258)||(28565462-28565528)
chr4 (213-260)||(28565721-28565768)
[»] chr8 (1 HSPs)
chr8 (90-139)||(12347648-12347697)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 20041334 - 20041468
Alignment:
Q  153 ttttttaaggtggccgttttaattaaacatttttgtgtcatggtttagaaccctgcaacaaaagttgttccatctaaaaatggaagtgcacctgtaaaga 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20041334 ttttttaaggtggccgttttaattaaacatttttgtgtcatggtttagaaccctgcaacaaaagttgttccatctaaaaatggaagtgcacctgtaaaga 20041433  T
Q  253 aagctgatccttattattcatcttctgaagaatct 287  Q
    |||||||||||||||||||||||||||||||||||    
T  20041434 aagctgatccttattattcatcttctgaagaatct 20041468  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 20041568 - 20041659
Alignment:
Q  169 ttttaattaaacatttttgtgtcatggtttagaaccctgcaacaaaagttgttccatctaaaaatggaagtgcacctgtaaagaaagctgat 260  Q
    |||||||||||| ||||||| ||||||||||||| |||||  || | |||||||| || ||||  || |||||||| | |||||| ||||||    
T  20041568 ttttaattaaacttttttgtttcatggtttagaaacctgctgcagaggttgttccttccaaaatagggagtgcacccgcaaagaaggctgat 20041659  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 20041263 - 20041311
Alignment:
Q  23 cttcaaagaaacaaaaggtagatgatgaggttgctgctaaacaaaaggtatt 74  Q
    |||||||||| |||||||||||||   |||||||||| ||||||||||||||    
T  20041263 cttcaaagaagcaaaaggtagatg---aggttgctgccaaacaaaaggtatt 20041311  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 25281359 - 25281408
Alignment:
Q  90 tagttcggaggaatcctttgatgaatctgaggatgcggtattatatttca 139  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  25281359 tagttcggaggaatcctctgatgaatctgaagatgaggtattatatttca 25281408  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 28565528 - 28565462
Alignment:
Q  192 atggtttagaaccctgcaacaaaagttgttccatctaaaaatggaagtgcacctgtaaagaaagctg 258  Q
    |||||| |||| |||||| | |||| |||||||||||||||||| |||||||| | |||||||||||    
T  28565528 atggttcagaaacctgcagctaaagctgttccatctaaaaatgggagtgcacccgcaaagaaagctg 28565462  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 28565768 - 28565721
Alignment:
Q  213 aaagttgttccatctaaaaatggaagtgcacctgtaaagaaagctgat 260  Q
    |||| |||||||||||||||||| |||||||||| |||||||| ||||    
T  28565768 aaagctgttccatctaaaaatgggagtgcacctgcaaagaaagttgat 28565721  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 12347648 - 12347697
Alignment:
Q  90 tagttcggaggaatcctttgatgaatctgaggatgcggtattatatttca 139  Q
    ||||||||||||||||| |||||||| ||| |||| ||||||||||||||    
T  12347648 tagttcggaggaatcctctgatgaatatgaagatgaggtattatatttca 12347697  T

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