View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3332_low_3 (Length: 502)
Name: NF3332_low_3
Description: NF3332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3332_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 22 - 488
Target Start/End: Original strand, 10793700 - 10794167
Alignment:
| Q |
22 |
aattaaaagattctattgctatgaggaaaagaaatggtaacaatggatcctctcgtcttaacccacaacccatctcaaattcttctataggactaccgtt |
121 |
Q |
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| T |
10793700 |
aattaaaagattatattgctatgaggaaaagaaatggtgacaatggatcctctcgtcttaacccacaaccgatctcaaattcttctataggactaccgtt |
10793799 |
T |
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| Q |
122 |
ccttaaggctgagaccgaggcagccttcgaacattctaagatccattccctccatctactatgaaatcccattttctccatgacataatccagatacttc |
221 |
Q |
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| T |
10793800 |
ccttagggctgagaccgaggcagccttcaaacattctaagatccattccctccatctaccatgaaatcccattttctccatgacataatccagatacttc |
10793899 |
T |
|
| Q |
222 |
caa-tcaatagattcataagcctttcctcc-gaattcactttaaacatcaccacctcttttttcattcttttcgcctcatccactatctcgttcgcaata |
319 |
Q |
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||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10793900 |
caattcaatagattcataagcctttcctccaaaattcactttaaacatcaccacctcttttttcattcttttcgcctcatccactatctcattcgcaata |
10793999 |
T |
|
| Q |
320 |
ctaaccccatccaaaacccgtctcccacctacaatgacagactgaggttccgatataactttgctaataacatgctccaacctatttgccaaaacttttg |
419 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10794000 |
ctaaccccatccaaaa-ccgtctcccacctacaatgacagactgaggttccgatataactttgctaataacatgctccaacctatttgccaaaacttttg |
10794098 |
T |
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| Q |
420 |
atatcaccttataaatacacccatttaacaaaacacgtctaaaatcagacacattcattggattatatt |
488 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
10794099 |
atatcaccttataaatacacccatttaacgaaacacatctaaaatcagacacattcattggattatatt |
10794167 |
T |
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