View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3332_low_4 (Length: 415)
Name: NF3332_low_4
Description: NF3332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3332_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 4513200 - 4513358
Alignment:
| Q |
18 |
atttcaaacctcaagtaacacaatttatatatcttgcatacataggacatagtttaactatcttgtaatccacgtaattaaaggaatgatgtttgtaatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4513200 |
atttcaaacctcaagtaacacaatttatatatcttgcatacat-------agtttaactatcttgtaatccacgtaatttaaggaatgatgtttgtaatc |
4513292 |
T |
|
| Q |
118 |
tagtgtaaattattgcacatgaaggaagtgaaagcgaaaaggactcgttcatgtcgcattttcata |
183 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4513293 |
tagtgtaatttattgcacatgaaggaagtgaaagcgaaaaggactcgttcatgtcacattttcata |
4513358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 182 - 314
Target Start/End: Original strand, 4513640 - 4513772
Alignment:
| Q |
182 |
tagtttaagtatcttgtaaaccacataatataagtatcttgtacacaattatctaattgaaaaatcatttctttttcaatggttttgtataccgttgtaa |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4513640 |
tagtttaagtatcttgtaaaccacataatttaagtatcttgtacacaattatctaattgaaaaatcatttctttttcaatggttttggataccgttgtaa |
4513739 |
T |
|
| Q |
282 |
atataactcaaaatattgtatctatagtgttat |
314 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |
|
|
| T |
4513740 |
atataactcaaaatattgcatctatattgttat |
4513772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 319 - 404
Target Start/End: Original strand, 4513806 - 4513891
Alignment:
| Q |
319 |
ttgtatattgcatcgataatagatcacctcccatgtctaaaaccatatttaatttccaattatttgagtctctctttttagtctct |
404 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4513806 |
ttgtatattgcatccataatagatcacatcccatgcctaaaaccatatttaatttccaattatttgagtctctctttttagtctct |
4513891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 4513208 - 4513160
Alignment:
| Q |
108 |
gtttgtaatctagtgtaaattattgcacatgaaggaagtgaaagcgaaa |
156 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4513208 |
gtttgaaatctagtgtaaattattgcacatgaaggaagcgaaagcgaaa |
4513160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University