View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3333_high_1 (Length: 317)
Name: NF3333_high_1
Description: NF3333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3333_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 301
Target Start/End: Original strand, 52709322 - 52709621
Alignment:
| Q |
2 |
gggctgctgcaacttcattttctaaagaatttgaatcgaaaaattaaagctcaggtcattcgtggcttttttacgatagtttgtttgattcgcaccatat |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52709322 |
gggctgctgcaacttcattttctaaagaatttgaatcgaaaaattaaagctcaggtcattcgtgggttttttacgatagtttgtttgattcgcaccatat |
52709421 |
T |
|
| Q |
102 |
ggcttttttcataaacaaatcaagatcttatatcaaaaattgataaataaagagtaaagaagacgtcattatcgccattgagtttcactagaaaaatgga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52709422 |
ggcttttttcataaacaaatcaagatcttatatcaaaaattgataaataaagagtaaagaagacgtcattatcgccattgagattcactagaaaaatgga |
52709521 |
T |
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| Q |
202 |
gtatgaaaataaagtactagtcagtcgaaataaaggatggtagataatgaattaatgtctttctatttaatctccatcaacagctctgtcacacattatg |
301 |
Q |
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| T |
52709522 |
gtatgaaaataaagtactagtcagtcgaaataaaggatggtagataatgaattaatgtctttctatttaatctccatcaacagctctgtcacacattatg |
52709621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 26398792 - 26398718
Alignment:
| Q |
10 |
gcaacttcattttctaaagaatttgaatcgaaaaattaaagctcaggtcattcgtggcttttttacgatagtttg |
84 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26398792 |
gcaacttcattttctaaagaatttgaattgaaaaattaaagctcaggtcattcgtaaattttttacgatagtttg |
26398718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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