View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3333_high_2 (Length: 308)
Name: NF3333_high_2
Description: NF3333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3333_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 42534997 - 42535278
Alignment:
| Q |
20 |
tgctgctaaaaacattgtatttgttcttgccgaatctggtctttgtgcagcttttagtagtgaaacagatgagaggatttgctttatgaatctgcatcct |
119 |
Q |
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| T |
42534997 |
tgctgctaaaaacattgtatttgttcttgccgaatctggtctttgtgcagcttttagtagtgaaacagatgagaggatttgctttatgaatctgcatcct |
42535096 |
T |
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| Q |
120 |
aacgacctcatcaggagactcttctacaacaagaacaatgactcacttattacagtgtcaagccgaagtaggatgccggaggaatacagatcaacacgca |
219 |
Q |
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| T |
42535097 |
aacgacctcatcaggagactcttctacaacaagaacaatgactcacttattacagcgtcaagccgaagtaggatgccggaggaatacagatcaacacgca |
42535196 |
T |
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| Q |
220 |
ttgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgt |
301 |
Q |
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| T |
42535197 |
ttgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgt |
42535278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 202 - 301
Target Start/End: Original strand, 42529457 - 42529556
Alignment:
| Q |
202 |
aatacagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgt |
301 |
Q |
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| T |
42529457 |
aatacagatcaacaagtattgaatacacaaggagggccaagccggatgccggttttgatctttttcagtcagattcttttgttgtaaaatttgatgatgt |
42529556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 27821842 - 27821939
Alignment:
| Q |
81 |
gaaacagatgagaggatttgctttatgaatctgcatcctaacgacctcatcaggagactcttctacaacaagaacaatgactcacttattacagtgtc |
178 |
Q |
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| T |
27821842 |
gaaacaaatgagaggatttgctttttgaatatctgccctgacgaagtcatccgcagcctcttctacaacaagaacaatgactcacttattacagtgtc |
27821939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 27822084 - 27822138
Alignment:
| Q |
226 |
acataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt |
280 |
Q |
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| T |
27822084 |
acataaagagggccaagccggatgctggttttcctcttttccagtccgagtcttt |
27822138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 27820380 - 27820440
Alignment:
| Q |
19 |
ttgctgctaaaaacattgtatttgttcttgccgaatctggtctttgtgcagcttttagtag |
79 |
Q |
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| T |
27820380 |
ttgctgctaagaatattgtctttgctcttgctcattctggtctttgtgctgcttttagtag |
27820440 |
T |
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