View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3333_high_3 (Length: 249)
Name: NF3333_high_3
Description: NF3333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3333_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 329353 - 329595
Alignment:
| Q |
1 |
ctataagcactcaaaattttattccatttttctttgtttaatttcataataattaaactttccaggtactgcttatgactttgcaaaatgcacctccagg |
100 |
Q |
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| T |
329353 |
ctataagcactcaaaattttatcccatttttct--gtttaatttcataataattaaactttccaggtactgcttatgactttgcaaaatgcacctccagg |
329450 |
T |
|
| Q |
101 |
ccttgactacgaaagggacaagaagttctctaaggtcagcccagttcagtttgattccatcatttgctgattgctcctgtaagcaaattaaacccttcta |
200 |
Q |
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| T |
329451 |
ccttgactacgaaagggacaagaagttctctaaggtcagcccagttcagtttgattccatcatttgctgattgctcctgtaagcaaactaaacccttcta |
329550 |
T |
|
| Q |
201 |
tgatttttactagctaatatctttattccttttttcttctcagtc |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
329551 |
tgatttttactagctaatatctttattccttttttcttttcagtc |
329595 |
T |
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Back To:
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 1202405 - 1202352
Alignment:
| Q |
70 |
tgcttatgactttgcaaaatgcacctccaggccttgactacgaaagggacaaga |
123 |
Q |
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|||||||||||||||| ||||| |||||||| ||||| || ||||| ||||||| |
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| T |
1202405 |
tgcttatgactttgcagaatgcccctccaggtcttgattatgaaagagacaaga |
1202352 |
T |
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