View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3333_high_6 (Length: 209)
Name: NF3333_high_6
Description: NF3333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3333_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 35132421 - 35132279
Alignment:
| Q |
66 |
cttgatctctctagttttgaagtttttaacactcggtagtgaagttaaaaataaatagtttgtctttaatttttgtcaataatttgttctttttcaaatg |
165 |
Q |
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| T |
35132421 |
cttgatctctctagttttgaagtttttaacactcggtagtgaagttaaaaataaatagtttgtctttaatttttgtcaataatttgttctttttcaaatg |
35132322 |
T |
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| Q |
166 |
aatattccttatgactaattgcttagaacttcatctcactcga |
208 |
Q |
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| T |
35132321 |
aatattccttatgactaattgcttagaacttcatgttactcga |
35132279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 35139751 - 35139630
Alignment:
| Q |
66 |
cttgatctctctagttttgaagtttttaacactcggtagtgaagttaaaaataaatagtttgtctttaatttttgtcaataatttgttctttttcaaatg |
165 |
Q |
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| T |
35139751 |
cttgatctctccagttttaaagtttttaacacttg-taatgaagttaaaaataaatagttt-----------ttgtcaataatttgttctttttcaaatg |
35139664 |
T |
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| Q |
166 |
aatattccttatgactaattgcttagaacttcat |
199 |
Q |
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| T |
35139663 |
agtattccttgtgattaaatttttagaacttcat |
35139630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 21262517 - 21262488
Alignment:
| Q |
1 |
tttataaaggaccggaggtagtatattaaa |
30 |
Q |
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| T |
21262517 |
tttataaaggaccggaggtagtatattaaa |
21262488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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