View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3333_low_4 (Length: 233)
Name: NF3333_low_4
Description: NF3333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3333_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 328905 - 329126
Alignment:
| Q |
13 |
gcaatcgcatcagctcataattgcccctccaagagtttttgcaatgtgaatgattgggagtgtgtcattattatttgaagagagatgctattcattacga |
112 |
Q |
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| T |
328905 |
gcaatcgcatcagctcacaattgcccctccaagagtttttgcaatgtgaatgattgggagtgtgtcattattatttgaaatgagatgctattcattacga |
329004 |
T |
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| Q |
113 |
atgcccgta-cacgaaacgccagaaccatttattttaaaataagtcaacaatattttaagttgtctttgatggaatacatgaggtatcggaagtggaacc |
211 |
Q |
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| T |
329005 |
atgcccgtaacacgaaacgccagaaccatttattttaaaataagtcaacaatattttaagttgtctttgatggaatacatgaggtatcggaagtggaacc |
329104 |
T |
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| Q |
212 |
actaaatagaagcactttcact |
233 |
Q |
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|||||||||||||||||||||| |
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| T |
329105 |
actaaatagaagcactttcact |
329126 |
T |
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