View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3333_low_5 (Length: 209)
Name: NF3333_low_5
Description: NF3333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3333_low_5 |
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| [»] scaffold1030 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 35139803 - 35139948
Alignment:
| Q |
22 |
tatgtattagcaatttaagttttttagttaatacaaaccaaatcaccatcaactttcacaattttattaacaacaaatttcacaaattttgaatttaaac |
121 |
Q |
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| T |
35139803 |
tatgtattagtaatttaagttttttagttaatacaaaccaaatcaccaacaactttcacaatttttttaacaacaaatttcacaaattttgaatataaac |
35139902 |
T |
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| Q |
122 |
atatatttatttacaaattcctattaaaaaattgtagaagagtttc |
167 |
Q |
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| T |
35139903 |
atatatttgtttacaaattccaattaaaaaattgtagaagaatttc |
35139948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 35132467 - 35132607
Alignment:
| Q |
22 |
tatgtattagcaatttaagttttttagttaatacaaaccaaatcaccatcaactttcacaattttattaacaacaaatttcacaaattttgaatttaaac |
121 |
Q |
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| T |
35132467 |
tatgtattagcaaattaagttttttagttaatacaaaccaaatcaccatcaactttcacaattttattaaca---------acaaattttgaatttaaac |
35132557 |
T |
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| Q |
122 |
atatatttatttacaaattcctattaaaaaattgtagaagagtttcctta |
171 |
Q |
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| T |
35132558 |
atatatttatttacaaattcctattaaaaaattgtagaagagtttcctta |
35132607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 818 - 765
Alignment:
| Q |
33 |
aatttaagttttttagttaatacaaaccaaatcaccatcaactttcacaatttt |
86 |
Q |
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| T |
818 |
aattcaagtattttagttaatataaatcaaatcacaatcaactttcacaatttt |
765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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