View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3334_high_10 (Length: 262)
Name: NF3334_high_10
Description: NF3334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3334_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 30641514 - 30641291
Alignment:
| Q |
19 |
agaaggtgaaaataagcacgacccatatgagattatggagcgaaatcgtcatttcttgaaaaacccatatctgaaatgagataaaaattcaaactttgaa |
118 |
Q |
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|||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30641514 |
agaaggtgaaaataagaacaacccagatgagattatggagcgaaatcgtcattttttgcaaaactcatatctgaaatgagataaaaattcaaactttgaa |
30641415 |
T |
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| Q |
119 |
gttaagaaaatgtgaaaattgatgtgataaaggaagaaaaaattctgacacagaagggatgaaaatagctgaaagttaaaaattcaaacctcagaacaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30641414 |
gttaagaaaatgtgaaaattgatgtgataaaggaagaaaaaattatgacacagaagcaatgaaaatagctgaaagttaaaaattcaaacctcaga--aca |
30641317 |
T |
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| Q |
219 |
gtgaataacgagttagatgagtgcag |
244 |
Q |
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||||||| |||||||||||||||||| |
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| T |
30641316 |
gtgaatagcgagttagatgagtgcag |
30641291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 45229033 - 45228814
Alignment:
| Q |
19 |
agaaggtgaaaataagcacgacccatatgagattatggagcgaaatcgtcatttcttgaaaaacccatatctgaaatgagataaaaattcaaactttgaa |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45229033 |
agaaggtgaaaataagcacgacccagatgagattatggagcgaaatcgtcatttcttgcaaaacccatatctgaaatgagataaaaattcaaactttgaa |
45228934 |
T |
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| Q |
119 |
gttaagaaaatgtgaaaattgatgtgataaaggaagaaaaaattctgacacagaagggatgaaaatagctgaaagttaaaaattcaaacctcagaacaca |
218 |
Q |
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| T |
45228933 |
gttaagaaagtgtgaaaattgatgtggtaaaggaagaaaaaattctgacacagaagcgatgaaaatagttgaaagtt----attcaaacctcaga--aca |
45228840 |
T |
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| Q |
219 |
gtgaataacgagttagatgagtgcag |
244 |
Q |
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||||||| |||||||||||||||||| |
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| T |
45228839 |
gtgaatagcgagttagatgagtgcag |
45228814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 45229062 - 45229031
Alignment:
| Q |
19 |
agaaggtgaaaataagcacgacccatatgaga |
50 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
45229062 |
agaaggtgaaaataagcacgacccatatgaga |
45229031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 7235122 - 7235269
Alignment:
| Q |
13 |
atgaccagaaggtgaaaataagcacgacccatatgagattatggagcgaaatcgtcatttcttgaaaaacccatatctgaaatgagataaaaattcaaac |
112 |
Q |
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|||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7235122 |
atgatcagaaagtgaaaataagcacgacccagatgagattatggagtgaaatcgtcatatcttgcaaaacccatatctgaaatgagataaaaattcaaac |
7235221 |
T |
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| Q |
113 |
tttgaagttaagaaaatgtgaaaattgatgtgataaaggaagaaaaaa |
160 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
7235222 |
tttgaagttaagaaagtgtgaaaattgatgtaataaaggaagaaaaaa |
7235269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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