View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3334_high_4 (Length: 425)
Name: NF3334_high_4
Description: NF3334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3334_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 425
Target Start/End: Original strand, 36407085 - 36407496
Alignment:
| Q |
14 |
gaacccaacacttcaagagccaaaggaagaccttgagcatattcgactacactttcagacaactccagataaccctctttaggtgcatcttctttgaatg |
113 |
Q |
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| T |
36407085 |
gaacccaacacttcaagtgccaaaggaaggcctcgagcatattcaaccacactttcagacaactccacaaaaccctctttaggtgcatcctctttaaatg |
36407184 |
T |
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| Q |
114 |
ctttttcataaaatagttgaagggattcacttttatttaagattttactctcatacatttcaaacattacagcatgcgatatcaacaggtgcttatccct |
213 |
Q |
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| T |
36407185 |
ctttttcacaaaaaagatgaagggattcacttttatttaaaattttactctcatacatttcaaacaatacatcatgcgatatcaacaggtgcttatccct |
36407284 |
T |
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| Q |
214 |
agttgtaactataattctactacctcgaccaaaccattcttggcttccagccaaattctcaagttggcttttagaacttacatcgtcaaggacaagaaga |
313 |
Q |
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| T |
36407285 |
agttgtgactataattctactacctcgaccaaaccattcttggcttcctgccaaattctcaagttggcttttagaacttacatcatcaaggacaagaaga |
36407384 |
T |
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| Q |
314 |
acttttttggttgataaaaggtttcttaagctgtcctttccatggcttaatgtttcaattatcattccttttatgttcagatgagaaagaattttatttt |
413 |
Q |
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| T |
36407385 |
acctttttgttggataaaaggtttctcaagctgtcctttccttggcttaatgtttcaattaccattccttttatgttcagatgagaaagaattttatttt |
36407484 |
T |
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| Q |
414 |
gtaactgttgga |
425 |
Q |
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| T |
36407485 |
gtaactgttgga |
36407496 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 35685849 - 35685786
Alignment:
| Q |
258 |
ttccagccaaattctcaagttggcttttagaacttacatcgtcaaggacaagaagaactttttt |
321 |
Q |
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| T |
35685849 |
ttccagctaaattctctagttggatatcagaacttagatcatcaaggacaaggagaactttttt |
35685786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 283
Target Start/End: Original strand, 11124158 - 11124244
Alignment:
| Q |
197 |
aacaggtgcttatccctagttgtaactataattctactacctcgaccaaaccattcttggcttccagccaaattctcaagttggctt |
283 |
Q |
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| T |
11124158 |
aacaagtgcttatctctacttgtgattataactctacttcctggaccaaaccattcttgcttcccagctaaattctccaattggctt |
11124244 |
T |
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