View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3334_high_8 (Length: 274)
Name: NF3334_high_8
Description: NF3334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3334_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 54683677 - 54683431
Alignment:
| Q |
16 |
atcagaaatcagaggggacaaagcttattaattacaatcagttgttggctacatctggtggtggtagcatatcaatnnnnnnn-tatcattccctaattg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54683677 |
atcagaaatcagaggggacaaagcttattaattacaatcaattgttggctacatctggtggtggtagcatatcaataaaaaaaatatcattccctaattg |
54683578 |
T |
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| Q |
115 |
ttgtatagattggttcaataatttcttcgaattaattttaccaaaccaaatcatactacttcttttgtc-nnnnnnnnnnntcatactacttcttaatta |
213 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54683577 |
ttgtttagattggttcaataatttcttcgaattaattttaccaaaccaaatcatactacttcttttgtcaaaaaaaaaaaatcatactacttcttaatta |
54683478 |
T |
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| Q |
214 |
tacatatgtcctagattttgagaatttaatttctctcgtgttattat |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54683477 |
tacatatgtcctagattttgagaatttaatttctctcgtgttattat |
54683431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 37167518 - 37167634
Alignment:
| Q |
16 |
atcagaaatcagaggggacaaagcttattaattacaatcagttgttggctacatctggtggtggtagcatatcaatnnnnnnntatcattccctaattgt |
115 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37167518 |
atcagagatcagaggggacagagcttattaattacaatcagttgttggctacatctggtggtggtagcatatcaataaaaaaatatcattccctaattgt |
37167617 |
T |
|
| Q |
116 |
tgtatagattggttcaa |
132 |
Q |
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|||| |||||| ||||| |
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| T |
37167618 |
tgtacagattgtttcaa |
37167634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 37167701 - 37167766
Alignment:
| Q |
195 |
tcatactacttcttaattatacatatgtcctagattttgagaatttaatttctctcgtgttattat |
260 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37167701 |
tcatactacttcttaattatacatatgtcttagattttgagaatttaatttctctcgtgttattat |
37167766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 37167658 - 37167714
Alignment:
| Q |
122 |
gattggttcaataatttcttcgaattaattttaccaaaccaaatcatactacttctt |
178 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37167658 |
gattggttcaattattttttcgaattaattttaccaaaccaaatcatactacttctt |
37167714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 37575031 - 37574975
Alignment:
| Q |
122 |
gattggttcaataatttcttcgaattaattttaccaaaccaaatcatactacttctt |
178 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37575031 |
gattggttcaataatttcttcgaatttattttaccaaaccaaatcatactacttctt |
37574975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 37574988 - 37574952
Alignment:
| Q |
195 |
tcatactacttcttaattatacatatgtcctagattt |
231 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
37574988 |
tcatactacttcttaattatacatatgtcttagattt |
37574952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 32969793 - 32969847
Alignment:
| Q |
122 |
gattggttcaataatttcttcgaattaattttaccaaaccaaatcatactacttc |
176 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32969793 |
gattggttcaataatttcttcgaattaattctaccaaaccaaatcatactacttc |
32969847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 32969836 - 32969890
Alignment:
| Q |
195 |
tcatactacttcttaattatacatatgtcctagattttgagaatttaatttctct |
249 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32969836 |
tcatactacttcataattatacatatgtcctagattttgagagtttaatttctct |
32969890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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