View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3334_low_1 (Length: 608)

Name: NF3334_low_1
Description: NF3334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3334_low_1
NF3334_low_1
[»] chr8 (3 HSPs)
chr8 (17-588)||(26494749-26495320)
chr8 (142-346)||(26506901-26507105)
chr8 (161-258)||(41127308-41127405)
[»] chr5 (1 HSPs)
chr5 (161-276)||(15176287-15176402)
[»] chr2 (8 HSPs)
chr2 (161-277)||(2330996-2331112)
chr2 (164-277)||(2303729-2303842)
chr2 (161-277)||(2327281-2327397)
chr2 (161-277)||(2310444-2310560)
chr2 (161-260)||(2321428-2321527)
chr2 (161-277)||(2294113-2294229)
chr2 (297-346)||(2294246-2294295)
chr2 (297-346)||(2310577-2310626)
[»] chr4 (1 HSPs)
chr4 (161-207)||(55017087-55017133)


Alignment Details
Target: chr8 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 17 - 588
Target Start/End: Original strand, 26494749 - 26495320
Alignment:
Q  17 aaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatcctacggtgtttaagccagagaggtttctaaaagatg 116  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494749 aaaaatgggactgtgaattttatggtggcagatataggattagatccaacggtttgggaggatcctacggtgtttaagccagagaggtttctaaaagatg 26494848  T
Q  117 caaaaaatagaaacgaatttgacgcatttgatgttaggggtataaaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494849 caaaaaatagaaacgaatttgacgcatttgatgttaggggtataaaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataa 26494948  T
Q  217 attggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaagacttcattaccaggaagtaatgttgatttgacagaaaaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494949 attggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaagacttcattaccaggaagtaatgttgatttgacagaaaaa 26495048  T
Q  317 caagaatttacaatggtgatgaaatatccactagaaaatcaaatttctctcaggaactagattcaacaattggagacattttataggacatgatcatgat 416  Q
    || |||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  26495049 caggaatttacaatggtgatgaaatatccactagaagctcaaatttctctcaggaattagattcaacaattggagacattttataggacatgatcaggat 26495148  T
Q  417 tgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacacatttagatataaatgatacattgatgccatagagcaatga 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26495149 tgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacacatttagatataaatgacacattgatgccatagagcaatga 26495248  T
Q  517 tacaaatatagcaatgtaaggttagtttacaacatcaatcaactatggtgtaaatatatgtgtatatctgtg 588  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  26495249 tacaaatatagcaatgtatggttagtttacaacatcaatcaaccatggtgtaaatatatgtgtgtgtctgtg 26495320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 142 - 346
Target Start/End: Original strand, 26506901 - 26507105
Alignment:
Q  142 atttgatgttaggggtataaaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatac 241  Q
    |||||||||||  |||  ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |||    
T  26506901 atttgatgttacaggtcaaaatgagataaagatgatgccatttggagcaggaaggaggatttgtcctgcctataacttggcaatgctccatgtagagtac 26507000  T
Q  242 tttgttgctaatttggttttgaactttgagtggaagacttcattaccaggaagtaatgttgatttgacagaaaaacaagaatttacaatggtgatgaaat 341  Q
    |||||  | ||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||    
T  26507001 tttgtgacaaatttagtttggaactttgaatggaagacttcattaccagaaagtaatgttgatttgtcagaaaaacaggaatttactatggtgatgaaat 26507100  T
Q  342 atcca 346  Q
    |||||    
T  26507101 atcca 26507105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 161 - 258
Target Start/End: Original strand, 41127308 - 41127405
Alignment:
Q  161 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggt 258  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||  ||||| || ||  |||||||||| ||||||||||| |||||||||||    
T  41127308 aaagagataaagatgatgccgtttggagttgggaggagaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttggt 41127405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 15176402 - 15176287
Alignment:
Q  161 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 260  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||| ||||   || ||| || | || || |||||||||||||| ||||| ||||    
T  15176402 aaagagataaagatgatgccatttggagcagggaggagaatgtgtcctggctatggtttagcattgttgcacttggaatactttgttgccaattttgttt 15176303  T
Q  261 tgaactttgagtggaa 276  Q
    |||| |||||||||||    
T  15176302 tgaattttgagtggaa 15176287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 2330996 - 2331112
Alignment:
Q  161 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 260  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||||||  ||||| || ||  |||| ||||| ||||| ||||| |||||||||||||    
T  2330996 aaagagataaagatgatgccatttggagctgggaggagaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggttt 2331095  T
Q  261 tgaactttgagtggaag 277  Q
     ||| || || ||||||    
T  2331096 ggaatttcgattggaag 2331112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 277
Target Start/End: Original strand, 2303729 - 2303842
Alignment:
Q  164 gagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttga 263  Q
    |||||||||||||||||||||| ||| |  ||||| |||||||||||   ||| || ||  |||||||||||||||| ||||| ||||||||||||| ||    
T  2303729 gagataaagatgatgccgtttgaagctgaaaggagaatttgtcctgcacttaatttagctttgctccatttagaatattttgtggctaatttggtttgga 2303828  T
Q  264 actttgagtggaag 277  Q
    | || || ||||||    
T  2303829 atttcgattggaag 2303842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 2327281 - 2327397
Alignment:
Q  161 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 260  Q
    |||||||| |||||||||||||||||||| || ||||| |||||||| |  ||||| || ||  | |||||||| ||||| ||||| |||||||||||||    
T  2327281 aaagagatcaagatgatgccgtttggagctggtaggagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggttt 2327380  T
Q  261 tgaactttgagtggaag 277  Q
     ||| || || ||||||    
T  2327381 ggaatttcgattggaag 2327397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 2310444 - 2310560
Alignment:
Q  161 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 260  Q
    ||||||||||||||||||||||||||||| || || || |||||||| |    ||| || ||  |||||||||| ||||| ||||| |||||||||||||    
T  2310444 aaagagataaagatgatgccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggttt 2310543  T
Q  261 tgaactttgagtggaag 277  Q
     ||| || || ||||||    
T  2310544 ggaatttcgattggaag 2310560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 2321428 - 2321527
Alignment:
Q  161 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 260  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||| |    ||| || ||  |||||||||| ||||| ||||| ||||| |||||||    
T  2321428 aaagagataaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggttt 2321527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 2294113 - 2294229
Alignment:
Q  161 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 260  Q
    ||||||||||||||||||||||||||||| || || || |||||||| |    ||| || ||  |||||||||| ||||| ||||| ||||| |||||||    
T  2294113 aaagagataaagatgatgccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggttt 2294212  T
Q  261 tgaactttgagtggaag 277  Q
     ||| || || ||||||    
T  2294213 ggaatttcgattggaag 2294229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 2294246 - 2294295
Alignment:
Q  297 atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca 346  Q
    ||||||||||||| |||| ||||||||| || |||||||||||| |||||    
T  2294246 atgttgatttgacggaaatacaagaattcaccatggtgatgaaaaatcca 2294295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 2310577 - 2310626
Alignment:
Q  297 atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca 346  Q
    ||||||||||||| |||| ||||||||| || |||||||||||| |||||    
T  2310577 atgttgatttgacggaaatacaagaattcactatggtgatgaaaaatcca 2310626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 55017087 - 55017133
Alignment:
Q  161 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcc 207  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||    
T  55017087 aaagagatgaagatgatgccgtttggtgctgggaggaggatttgtcc 55017133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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