View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3334_low_11 (Length: 250)
Name: NF3334_low_11
Description: NF3334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3334_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 33902418 - 33902181
Alignment:
| Q |
1 |
ctccaacaatttctccatccaatgataccaaaattcctgtttgagccatgttttcagcttctgctagtatttcttcagcttccactgaaatagctatgtt |
100 |
Q |
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| T |
33902418 |
ctccaacaatttctccatccaatgataccaaaattcctgtttgagccatgttttcagcttctgctagtatttcttcagcttccactgaaatagctatgtt |
33902319 |
T |
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| Q |
101 |
atgatctaacatcagttttttatttccaaccattatttccttgttttgaacaattgctttcactccatgtcctgcaatagacacaaattcttttgcttct |
200 |
Q |
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| T |
33902318 |
atgatctaacatcagttttttatttccaaccattatttccttgttttgaacaattgctttcactccatgtcctgcaatagacacaaattcttttgcttgt |
33902219 |
T |
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| Q |
201 |
ggccatgataagttattttgttcatcttgtgtgatatt |
238 |
Q |
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| T |
33902218 |
ggccatgatgggttattttgttcatcttgtgtgatatt |
33902181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 33919498 - 33919336
Alignment:
| Q |
1 |
ctccaacaatttctccatccaatgataccaaaattcctgtttgagccatgttttcagcttctgctagtatttcttcagcttccactgaaatagctatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33919498 |
ctccaacaatttctccatccaatgataccaaaattcctgtttgagccatgttttcagcttctgctagtatttcttcagcttccactgaaatagctatgtt |
33919399 |
T |
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| Q |
101 |
atgatctaacatcagttttttatttccaaccattatttccttgttttgaacaattgctttcac |
163 |
Q |
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| T |
33919398 |
atgatctaacatcagttttttatttccaaccattatttccttgttttgaacaattgccttcac |
33919336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 2775455 - 2775510
Alignment:
| Q |
24 |
gataccaaaattcctgtttgagccatgttttcagcttctgctagtatttcttcagc |
79 |
Q |
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||||| |||||||||||||||||||||||||| ||||| || |||| |||||||| |
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| T |
2775455 |
gatactaaaattcctgtttgagccatgttttcggcttcagcaagtagatcttcagc |
2775510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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