View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3334_low_13 (Length: 245)
Name: NF3334_low_13
Description: NF3334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3334_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 4486105 - 4485907
Alignment:
| Q |
17 |
acaaaccaactttaattagttactgtggagattcaattgtgtaagtattgaaaaataatagattcattcatatcattcaataaaattgttctttctcttt |
116 |
Q |
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| T |
4486105 |
acaaaccaactttaattagttactgtggagattcaattgtgtaagtattgaaaaataatagattcattcatatcattcaataaaattgttctttctcttt |
4486006 |
T |
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| Q |
117 |
gtttgtacctatcaattttccgtttcttctctttgcacattggcatttggaaaataatctgcattatattttataattcatcacaagtctctcatttcc |
215 |
Q |
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| T |
4486005 |
gtttgtacctatcaattttccgtttcttctctttgcacattggcatttggaaaataatctgcattatattctataattcatcacaagtctctcatttcc |
4485907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 4479905 - 4479797
Alignment:
| Q |
43 |
ggagattcaattgtgt-aagtattgaaaaataatagattcattcatatcattcaataaaattgttctttctctttgtttgtacctatcaattttccgttt |
141 |
Q |
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||||||||||||| || ||||| ||||||||| ||||||| ||||||| ||||||||||| ||||||||| |||||||||||||||||||| ||| || |
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| T |
4479905 |
ggagattcaattgggttaagtactgaaaaatagtagattcgttcatatgattcaataaaaatgttctttccttttgtttgtacctatcaattatccaatt |
4479806 |
T |
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| Q |
142 |
cttctcttt |
150 |
Q |
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| T |
4479805 |
ctcctcttt |
4479797 |
T |
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