View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3334_low_2 (Length: 574)
Name: NF3334_low_2
Description: NF3334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3334_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 66 - 555
Target Start/End: Original strand, 45624067 - 45624556
Alignment:
| Q |
66 |
aacgccgcttaatctctcaactcacagcatcccctaacaaacaacccaaactctcttcacctattccctctctccaccaacgcttcctccagaagcttct |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45624067 |
aacgccgcttaatctctcaactcacagcatcccctaacaaacaacccaaactctcttcacctattccctctctccaccaacgcttcctccagaagcttct |
45624166 |
T |
|
| Q |
166 |
agaaccttctaatccaaccccacaacctccttcatcttccaaacctgtaaagtttactcctttagagcatcaggtagtggaactcaaagctaagtatcct |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45624167 |
agaaccttctaatccaaccccacaacctccttcatcttccaaacctgtaaaatttactcctttagagcatcaggtagtggaactcaaagctaagtaccct |
45624266 |
T |
|
| Q |
266 |
gatgttcttttaatgattgaagttggttacaagtatcgatttttcggcgaagatgctgagaatgctgcaagggttttgggtatttatgctcatatggatc |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45624267 |
gatgttcttttaatgattgaagttggttacaagtatcgatttttcggcgaagatgctgagaatgctgcaagggttttgggtatttatgctcatatggatc |
45624366 |
T |
|
| Q |
366 |
ataattttttaactgctagcataccaacttttcgattaaatgtccatgtgaggaggcttgttagtgcagggtataaagttggtgttgttaagcagactga |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45624367 |
ataattttttaactgctagcataccaacttttcgattaaatgtccatgtgaggaggcttgttagtgcagggtataaagttggcgttgttaagcagactga |
45624466 |
T |
|
| Q |
466 |
aactgctgctattaagtcccatggtttgaatcgggccggtccattttgtcgaggtttgtcagggttgtatacgaaggccacacttgaggc |
555 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45624467 |
aactgctgctattaagtcccatggtttgaatcgggccggtccattttgtcgaggtttgtcagggttgtatacgaaggccacacttgaggc |
45624556 |
T |
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