View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3334_low_3 (Length: 482)
Name: NF3334_low_3
Description: NF3334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3334_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 28094214 - 28094695
Alignment:
| Q |
1 |
cacaatacataataattgattcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094214 |
cacaatacataataattgattcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaa |
28094313 |
T |
|
| Q |
101 |
atatctgcaacttatcaccacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28094314 |
atatctgcaacttatcaccacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacgcataaaac |
28094413 |
T |
|
| Q |
201 |
agggttatcaggaacaggcgtaacagtattctcaactctataaaagtattttctagacacaacatgttcctgctggctcaaatacttcatattactctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28094414 |
agggttatcaggaacaggcgtaacagtattctcaactctataaaagtattttctagacacaacatgttcctgttggctcaaatacttcatattactctca |
28094513 |
T |
|
| Q |
301 |
aactttgttaatggcaaatctgtgttaatccaattgtcccttagataccctgcactccaaagactactctttgccttcggttgtgtcgaatttctcggct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094514 |
aactttgttaatggcaaatctgtgttaatccaattgtcccttagataccctgcactccaaagactactctttgccttcggttgtgtcgaatttctcggct |
28094613 |
T |
|
| Q |
401 |
tccaaacgcatataactctttttggtagcacctccgcaatagtcttatcaaaaacattatcatcttggtgaaccaagtactc |
482 |
Q |
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| T |
28094614 |
tccaaacgcatataactctttttggtagcacctctgcaatagtcttatcaaaaacattatcatcttggtgaaccaagtactc |
28094695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 26156525 - 26156072
Alignment:
| Q |
19 |
attcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcac |
118 |
Q |
| |
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||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||| | ||| | | |||| |
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| T |
26156525 |
attcaggcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaatcggtggaaaagacctgaatcctatccg |
26156426 |
T |
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| Q |
119 |
cacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaacagggttatcaggaacagg |
218 |
Q |
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|| | || |||| |||||||||| ||| |||| || ||||||| |||||||||| || |||||||||||||| |||||||||||||| | || || |
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| T |
26156425 |
catatcccttagcaaagcactgagcaataaagagcctagcatatccatgaatgcgtctcgttacaggtttcacacacaaaacagggttatccgccactgg |
26156326 |
T |
|
| Q |
219 |
cgtaacagtattctcaactctataaaagtattttctagacacaacatgttcctgctggctcaaatacttcatattactctcaaactttgttaatggcaaa |
318 |
Q |
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||||| |||||||| || |||||||| ||||| || ||| |||| || |||| ||||||| ||| | ||| | |||||||| ||| |||| | | |
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| T |
26156325 |
agtaaccgtattctccaccctataaaaatatttcctggacgcaaccggtggttgctcactcaaatgctttaaattcccatcaaacttggttgatggaaga |
26156226 |
T |
|
| Q |
319 |
tctgtgttaatccaattgtcccttagataccctgcactccaaagactactctttgccttcggttgtgtcgaatttctcggcttccaaacgcatataactc |
418 |
Q |
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||||| |||||||| || ||| | | | ||||||||||||| ||| |||| ||| || || |||| ||| || ||||||||||||||||||||||| | |
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| T |
26156225 |
tctgtattaatccagttatccttcaaaaaccctgcactccacagagaactccctgctttaggctgtggcgatttactcggcttccaaacgcatataaccc |
26156126 |
T |
|
| Q |
419 |
tttttggtagcacctccgcaatagtcttatcaaaaacattatcatcttggtgaa |
472 |
Q |
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| T |
26156125 |
tcttaggtaacaactccgaaatggtttttccaaaaacatgatcatcttgatgaa |
26156072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 26169823 - 26169370
Alignment:
| Q |
19 |
attcatgctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaatctaagtctataaaatccgtagaaaatatctgcaacttatcac |
118 |
Q |
| |
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||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||| | ||| | | |||| |
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| T |
26169823 |
attcaggcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaatcctcatcaataaaatcggtggaaaagacctgaatcctatccg |
26169724 |
T |
|
| Q |
119 |
cacaccctttagaaaagcactgactaatgaagaatcttgcatatctatgaatgcgttctgtcacaggtttcacacataaaacagggttatcaggaacagg |
218 |
Q |
| |
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|| | || |||| |||||||||| ||| |||| || ||||||| |||||||||| || |||||||||||||| |||||||||||||| | || || |
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| T |
26169723 |
catatcccttagcaaagcactgagcaataaagagcctagcatatccatgaatgcgtctcgttacaggtttcacacacaaaacagggttatccgccactgg |
26169624 |
T |
|
| Q |
219 |
cgtaacagtattctcaactctataaaagtattttctagacacaacatgttcctgctggctcaaatacttcatattactctcaaactttgttaatggcaaa |
318 |
Q |
| |
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||||| |||||||| || |||||||| ||||| || ||| |||| || |||| ||||||| ||| | ||| | |||||||| ||| |||| | | |
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| T |
26169623 |
agtaaccgtattctccaccctataaaaatatttcctggacgcaaccggtggttgctcactcaaatgctttaaattcccatcaaacttggttgatggaaga |
26169524 |
T |
|
| Q |
319 |
tctgtgttaatccaattgtcccttagataccctgcactccaaagactactctttgccttcggttgtgtcgaatttctcggcttccaaacgcatataactc |
418 |
Q |
| |
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||||| |||||||| || ||| | | | ||||||||||||| ||| |||| ||| || || |||| ||| || ||||||||||||||||||||||| | |
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| T |
26169523 |
tctgtattaatccagttatccttcaaaaaccctgcactccacagagaactccctgctttaggctgtggcgatttactcggcttccaaacgcatataaccc |
26169424 |
T |
|
| Q |
419 |
tttttggtagcacctccgcaatagtcttatcaaaaacattatcatcttggtgaa |
472 |
Q |
| |
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| || |||| || ||||| ||| || || ||||||||| ||||||||| |||| |
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|
| T |
26169423 |
tcttaggtaacaactccgaaatggtttttccaaaaacatgatcatcttgatgaa |
26169370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 55164544 - 55164595
Alignment:
| Q |
25 |
gctttaccctcaacccttgcatgggtgagtccaacacatgcatcaacaaaat |
76 |
Q |
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||||| || |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
55164544 |
gcttttccttcaacccttgcatgagtgagtccaacacatgcatcaacaaaat |
55164595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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