View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3334_low_5 (Length: 393)
Name: NF3334_low_5
Description: NF3334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3334_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 28094204 - 28093847
Alignment:
| Q |
20 |
ttgtgtatatataagcaacagtttgcgctgtggtgtcatatttgtgcatatatatttattcttgcatgcatgcatttgttggaaatagaggttactagaa |
119 |
Q |
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| T |
28094204 |
ttgtgtatatataagcaacagtttgcgatgtggtgtcatatttgtgcatatatatttattcttgcatgcatgcatttgttggaaatagaggttactagaa |
28094105 |
T |
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| Q |
120 |
taaaagggtcaattaaacattccatgaaaaaattagccacactaacactcttcatgcttaacagaaagcaaaataaaatgttgatagattattagacatc |
219 |
Q |
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| T |
28094104 |
taaaagggtcaattaaacattccatgaaaaaattagccacactaacactcttcatgcttaacagaaagcaaaataaaatgttgatagattattagacatc |
28094005 |
T |
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| Q |
220 |
tatcaaaatcctctttatgtaatattgtaatgcaacaataccacattt---aagtttatattttgaatccccttcacatttgctccggttgaatgcgtat |
316 |
Q |
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| T |
28094004 |
tatcaaaatcctctttatgtaatattgtaatgcaacaaaataaaatgttgatagattatattttgaatccccttcacatttgctccggttgaatgcgtat |
28093905 |
T |
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| Q |
317 |
ctatgatgaaatgtgacaaaagtgctttaaccaaatagacttgatggatgttgggggc |
374 |
Q |
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| T |
28093904 |
ctatgatgaaatgtgacaaaagtgctttaaccaaatagacttgatggatgttgggggc |
28093847 |
T |
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