View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3334_low_6 (Length: 379)
Name: NF3334_low_6
Description: NF3334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3334_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 362
Target Start/End: Complemental strand, 34809954 - 34809601
Alignment:
| Q |
9 |
gaagaatatgagttaacagcgcgtgtgttccaccgtagagtgttcttgaagctaccacgtgttctccggtggaggtgagttggaggattgcagcggaaat |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34809954 |
gaagaaaatgagttaacagcgcgtgtgttccaccgtagagtgttcttgaagcgaccacgtgttctccggtggaggtgagttggaggattgcagcggaaat |
34809855 |
T |
|
| Q |
109 |
ggcggacatgccgctggatgtacagtaagctgcttctgtaccttcgagagcggccattagacgggagaggttaaggacggtagggttgaagtgacggctg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34809854 |
ggcggacatgccgctggatgtacagtaagcggcttctgtaccttcgagagcggccattagacgggagaggttaaggacggtagggttgaagtgacggctg |
34809755 |
T |
|
| Q |
209 |
tagacgaagaagtcgcggtctggacctaactctccggcgaacatgcgtcggagagtttctggttccatgactgtgaatgttaccgaggcttctattgaca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34809754 |
tagacgaagaagtcgcggtctggacctaactctccggcgaacatgcgtcggagagtttctggttccatgactgtgaatgttaccgaggcttctattgaca |
34809655 |
T |
|
| Q |
309 |
tgtttacgccgccgtgttcgccgaattcgtgtcgtgcgttggcgagtgaggtgg |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34809654 |
tgtttacgccgccgtgttcgccgaattcgtgtcgtgcgttggcgagtgaggtgg |
34809601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 356
Target Start/End: Original strand, 36595390 - 36595642
Alignment:
| Q |
104 |
gaaatggcggacatgccgctggatgtacagtaagctgcttctgtaccttcgagagcggccattagacgggagaggttaaggacggtagggttgaagtgac |
203 |
Q |
| |
|
||||||||||||||||| |||| |||||| || || || || || |||||||| || ||||| |||| ||| || |||||||| |||||||| |||| |
|
|
| T |
36595390 |
gaaatggcggacatgccactggctgtacaataggcggcctcagtgccttcgagggccgccatcttacggctgagattgaggacggttgggttgaaatgac |
36595489 |
T |
|
| Q |
204 |
ggctgtagacgaagaagtcgcggtctggacctaactctccggcgaacatgcgtcggagagtttctggttccatgactgtgaatgttaccgaggcttctat |
303 |
Q |
| |
|
||||||||||| || | |||| || |||| | |||||| || || || |||||||| |||||||||||||| ||||| || | ||||| || || |
|
|
| T |
36595490 |
ggctgtagacgtagtaatcgccttcatgaccaagctctccagcaaatattttgcggagagtatctggttccatgacggtgaacgtggcagaggcctcaat |
36595589 |
T |
|
| Q |
304 |
tgacatgtttacgccgccgtgttcgccgaattcgtgtcgtgcgttggcgagtg |
356 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||| || || || |||||||||| |
|
|
| T |
36595590 |
cgacatgttaaccccgccatgttcgccaaattcatggcgggcattggcgagtg |
36595642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University