View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3334_low_8 (Length: 274)

Name: NF3334_low_8
Description: NF3334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3334_low_8
NF3334_low_8
[»] chr3 (4 HSPs)
chr3 (16-260)||(54683431-54683677)
chr3 (16-132)||(37167518-37167634)
chr3 (195-260)||(37167701-37167766)
chr3 (122-178)||(37167658-37167714)
[»] chr2 (2 HSPs)
chr2 (122-178)||(37574975-37575031)
chr2 (195-231)||(37574952-37574988)
[»] chr5 (2 HSPs)
chr5 (122-176)||(32969793-32969847)
chr5 (195-249)||(32969836-32969890)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 54683677 - 54683431
Alignment:
Q  16 atcagaaatcagaggggacaaagcttattaattacaatcagttgttggctacatctggtggtggtagcatatcaatnnnnnnn-tatcattccctaattg 114  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  54683677 atcagaaatcagaggggacaaagcttattaattacaatcaattgttggctacatctggtggtggtagcatatcaataaaaaaaatatcattccctaattg 54683578  T
Q  115 ttgtatagattggttcaataatttcttcgaattaattttaccaaaccaaatcatactacttcttttgtc-nnnnnnnnnnntcatactacttcttaatta 213  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||    
T  54683577 ttgtttagattggttcaataatttcttcgaattaattttaccaaaccaaatcatactacttcttttgtcaaaaaaaaaaaatcatactacttcttaatta 54683478  T
Q  214 tacatatgtcctagattttgagaatttaatttctctcgtgttattat 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  54683477 tacatatgtcctagattttgagaatttaatttctctcgtgttattat 54683431  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 37167518 - 37167634
Alignment:
Q  16 atcagaaatcagaggggacaaagcttattaattacaatcagttgttggctacatctggtggtggtagcatatcaatnnnnnnntatcattccctaattgt 115  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  37167518 atcagagatcagaggggacagagcttattaattacaatcagttgttggctacatctggtggtggtagcatatcaataaaaaaatatcattccctaattgt 37167617  T
Q  116 tgtatagattggttcaa 132  Q
    |||| |||||| |||||    
T  37167618 tgtacagattgtttcaa 37167634  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 37167701 - 37167766
Alignment:
Q  195 tcatactacttcttaattatacatatgtcctagattttgagaatttaatttctctcgtgttattat 260  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37167701 tcatactacttcttaattatacatatgtcttagattttgagaatttaatttctctcgtgttattat 37167766  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 37167658 - 37167714
Alignment:
Q  122 gattggttcaataatttcttcgaattaattttaccaaaccaaatcatactacttctt 178  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  37167658 gattggttcaattattttttcgaattaattttaccaaaccaaatcatactacttctt 37167714  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 37575031 - 37574975
Alignment:
Q  122 gattggttcaataatttcttcgaattaattttaccaaaccaaatcatactacttctt 178  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37575031 gattggttcaataatttcttcgaatttattttaccaaaccaaatcatactacttctt 37574975  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 37574988 - 37574952
Alignment:
Q  195 tcatactacttcttaattatacatatgtcctagattt 231  Q
    ||||||||||||||||||||||||||||| |||||||    
T  37574988 tcatactacttcttaattatacatatgtcttagattt 37574952  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 32969793 - 32969847
Alignment:
Q  122 gattggttcaataatttcttcgaattaattttaccaaaccaaatcatactacttc 176  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32969793 gattggttcaataatttcttcgaattaattctaccaaaccaaatcatactacttc 32969847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 32969836 - 32969890
Alignment:
Q  195 tcatactacttcttaattatacatatgtcctagattttgagaatttaatttctct 249  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  32969836 tcatactacttcataattatacatatgtcctagattttgagagtttaatttctct 32969890  T

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