View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3334_low_9 (Length: 274)

Name: NF3334_low_9
Description: NF3334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3334_low_9
NF3334_low_9
[»] chr8 (4 HSPs)
chr8 (60-255)||(33902845-33903040)
chr8 (123-255)||(33919898-33920030)
chr8 (1-111)||(33919799-33919909)
chr8 (97-155)||(26556080-26556138)
[»] chr3 (1 HSPs)
chr3 (118-156)||(34409603-34409641)
[»] chr5 (1 HSPs)
chr5 (95-155)||(16870095-16870155)
[»] chr2 (1 HSPs)
chr2 (82-130)||(18953479-18953527)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 60 - 255
Target Start/End: Original strand, 33902845 - 33903040
Alignment:
Q  60 caaattcaataaccgctgtttattagtctttaacatcagcttattgggtcacgtgacgtgattttattgggtcacatatgacgtcagagactaaaaccaa 159  Q
    ||||||||||||| ||||||  ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33902845 caaattcaataactgctgttatttaatctttaacgtcagcttattgggtcacgtgacgtgattttattgggtcacatatgacgtcagagactaaaaccaa 33902944  T
Q  160 ccgtgtttaatttgtaaggattgaatctgaacaaaatatttagcgggactaaccaagtaattggactcaaatagtcaataagctcctctaggacga 255  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33902945 ccgtgtttaatttgtaaggattgaatctgaacaaaatatttagctggactaaccaagtaattggactcaaatagtcaataagctcctctaggacga 33903040  T

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Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 123 - 255
Target Start/End: Original strand, 33919898 - 33920030
Alignment:
Q  123 ttattgggtcacatatgacgtcagagactaaaaccaaccgtgtttaatttgtaaggattgaatctgaacaaaatatttagcgggactaaccaagtaattg 222  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33919898 ttattgggtcacatatgacgtcagagactaaaaccaatcgtgtttaatttgtaaggattgaatctgaacaaaatatttagcgggactaaccaagtaattt 33919997  T
Q  223 gactcaaatagtcaataagctcctctaggacga 255  Q
    |||||||||||||||||||||||||||||||||    
T  33919998 gactcaaatagtcaataagctcctctaggacga 33920030  T

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Target: chr8; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 33919799 - 33919909
Alignment:
Q  1 attattatagtgtttattggttttagtctctaaaattttttatttggattgagtccgtgcaaattcaataaccgctgtttattagtctttaacatcagct 100  Q
    ||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  33919799 attattatagtgtttattggttttaatctctaaaaaattttatttggattgagtccgtgcaaattcaataactgctgttttttagtctttaacgtcagct 33919898  T
Q  101 tattgggtcac 111  Q
    |||||||||||    
T  33919899 tattgggtcac 33919909  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 26556138 - 26556080
Alignment:
Q  97 agcttattgggtcacgtgacgtgattttattgggtcacatatgacgtcagagactaaaa 155  Q
    |||||||||||||||||||| ||||||||||||||||  |||||||| |||||||||||    
T  26556138 agcttattgggtcacgtgacatgattttattgggtcatgtatgacgttagagactaaaa 26556080  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 34409603 - 34409641
Alignment:
Q  118 tgattttattgggtcacatatgacgtcagagactaaaac 156  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  34409603 tgattatattgggttacatatgacgtcagagactaaaac 34409641  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 16870155 - 16870095
Alignment:
Q  95 tcagcttattgggtcacgtgacgtgattttattgggtcacatatgacgtcagagactaaaa 155  Q
    ||||||||||||| ||  || | |||||||||||||||||||||||| |||  ||||||||    
T  16870155 tcagcttattgggacaaatggcatgattttattgggtcacatatgacatcaaggactaaaa 16870095  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 18953479 - 18953527
Alignment:
Q  82 ttagtctttaacatcagcttattgggtcacgtgacgtgattttattggg 130  Q
    ||||||||| || | |||||||||||||||||| ||||||||| |||||    
T  18953479 ttagtctttgacgttagcttattgggtcacgtggcgtgattttgttggg 18953527  T

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